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. 2019 Dec 12;24(50):1900130. doi: 10.2807/1560-7917.ES.2019.24.50.1900130

Figure 2.

Association between the pairwise genetic distance and epidemiological links for the 134 MIRU-VNTR clustered tuberculosis cases, by WGS pipeline

cgMLST: core genome multilocus sequence typing; MIRU-VNTR: mycobacterial interspersed repeat unit-variable number of tandem repeat; MTB: Mycobacterium tuberculosis; RIVM: National Institute for Public Health and the Environment; SNP: single nucleotide polymorphism; SSI: Statens Serum Institut; WGS: whole genome sequencing.

WGS clusters were defined using a maximum pairwise distance of 12 SNPs/alleles.

Figure 2