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. 2019 Oct 31;6(4):485–501. doi: 10.3233/JND-190421

Table 1.

Rank order of discriminating biochemical pathways

No. Pathway Name Measured Metabolites in the Pathway (N) Expected Pathway Proportion (P = N/383) Expected Hits in Sample of 52 (P * 52) Observed Hits in the Top 52 Metabolites Fold Enrichment (Obs/Exp) Impact (Sum VIP Scores) Fraction of Impact Explained (% of 96.8) Increased Decreased
1 Phospholipid Metabolism 75 0.196 10.2 13 1.3 25.63 26% 12 1
2 Glycosphingolipid Metabolism 10 0.026 1.4 4 2.9 7.44 8% 2 2
3 Purine Metabolism 24 0.063 3.3 4 1.2 6.48 7% 4 0
4 SAM, SAH, Methionine, Cysteine, Glutathione 13 0.034 1.8 3 1.7 6.01 6% 3 0
5 Sphingomyelin Metabolism 36 0.094 4.9 3 0.6 5.78 6% 3 0
6 GABA, Glutamate, Arginine, Ornithine, Proline 5 0.013 0.7 3 4.4 5.07 5% 3 0
7 Tryptophan, Kynurenine, Serotonin, Melatonin 5 0.013 0.7 2 2.9 4.50 5% 2 0
8 Krebs Cycle 13 0.034 1.8 2 1.1 4.05 4% 2 0
9 Histidine, Histamine, Carnosine Metabolism 4 0.010 0.5 2 3.7 3.56 4% 2 0
10 Lysine Metabolism 3 0.008 0.4 2 4.9 3.48 4% 2 0
11 Nitric Oxide, Superoxide, Peroxide Metabolism 2 0.005 0.3 2 7.4 3.29 3% 1 1
12 1-Carbon, Folate Metabolism 6 0.016 0.8 1 1.2 2.59 3% 1 0
13 Amino-Sugar, Galactose, &Non-Glucose 6 0.016 0.8 1 1.2 2.25 2% 1 0
14 Plasmalogen Metabolism 7 0.018 1.0 1 1.1 1.83 2% 0 1
15 Pyrimidine Metabolism 14 0.037 1.9 1 0.5 1.81 2% 1 0
16 Vitamin B1 (Thiamine) Metabolism 2 0.005 0.3 1 3.7 1.70 2% 1 0
17 Cardiolipin Metabolism 8 0.021 1.1 1 0.9 1.67 2% 1 0
18 Vitamin C (Ascorbate) Metabolism 2 0.005 0.3 1 3.7 1.65 2% 1 0
19 Fatty Acid Oxidation and Synthesis 39 0.102 5.3 1 0.2 1.64 2% 0 1
20 Bioamines and Neurotransmitter Metabolism 7 0.018 1.0 1 1.1 1.62 2% 1 0
21 Glycolysis and Gluconeogenesis Metabolism 11 0.029 1.5 1 0.7 1.61 2% 1 0
22 Microbiome Metabolism 12 0.031 1.6 1 0.6 1.60 2% 1 0
23 Urea Cycle 2 0.005 0.3 1 3.7 1.54 2% 1 0
Subtotal 46 6
Total 52