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. 2019 Dec 18;10:5774. doi: 10.1038/s41467-019-13810-1

Fig. 7. smFRET assay for monitoring translation of codon 3–5.

Fig. 7

a Schematics of zero-mode waveguide (ZMW)-based single-molecule FRET assay to monitor translation. Elongation factors including fluorescently-labeled tRNA (Phe-(Cy5)-tRNAPhe) and quencher-labeled large ribosomal subunit (BHQ-50S) are delivered to pre-initiation complex (PIC) with labeled small ribosomal subunit (Cy3B-30S) and mRNA tethered to the ZMWs. b Expected fluorescence signal observed from a translating complex utilizing FRET between Cy3B and BHQ-2 on ribosomal subunits, as well as direct excitation of Cy5 on Phe-(Cy5)-tRNAPhe. c Measured percentage of complete translation events for different codon 3–5 mRNA constructs (n = 179 molecules for all; error bars represent s.e. based on the binomial distribution). d Representative traces for “processive” translation of K3I4H5 (Left) and “abortive” translation of T3V4G5 (Right).