Table 1.
Summary of transcriptome in each sample after quality control.
| Sample | Raw Reads | Clean Reads | Valid (%) | Q20 (%) | Q30 (%) | GC (%) |
|---|---|---|---|---|---|---|
| C1 | 52,103,142 | 50,962,816 | 97.81 | 97.88 | 94.11 | 51.64 |
| C2 | 50,825,206 | 49,705,732 | 97.80 | 97.56 | 93.46 | 52.31 |
| C3 | 44,598,296 | 43,010,684 | 96.44 | 97.48 | 93.45 | 55.64 |
| L1 | 46,276,016 | 45,479,152 | 98.28 | 97.91 | 94.02 | 51.80 |
| L2 | 54,087,972 | 52,918,552 | 97.84 | 97.21 | 92.42 | 51.85 |
| L3 | 55,174,098 | 53,559,112 | 97.07 | 97.60 | 93.32 | 54.47 |
| E1 | 59,386,648 | 58,378,284 | 98.30 | 97.21 | 92.49 | 46.61 |
| E2 | 56,732,666 | 55,961,382 | 98.64 | 97.24 | 92.57 | 47.98 |
| E3 | 74,080,310 | 72,958,276 | 98.49 | 97.35 | 92.77 | 47.70 |
| F1 | 63,019,000 | 61,842,676 | 98.13 | 97.24 | 92.57 | 47.51 |
| F2 | 63,144,758 | 62,126,664 | 98.39 | 97.15 | 92.34 | 46.71 |
| F3 | 61,542,756 | 60,005,800 | 97.50 | 97.34 | 92.81 | 46.32 |