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. 2019 Dec 19;20:290. doi: 10.1186/s13059-019-1852-7

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© The Author(s) 2019

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Results on simulated, merged hash-tagged scRNA-seq datasets confirmed scSplit a useful tool to demultiplex pooled single cells. a Confusion matrix showing scSplit demultiplexing results on simulated 2-, 3-, 4- and 8-mix; b TPR and FDR of for singlets and doublets predicted by scSplit and demuxlet compared to known truth before merging; c TPR and FDR of for singlets and doublets predicted by scSplit and demuxlet compared to cell hashing tags