Table 2.
Reassortment analysis of H6N2 virus genomes based on phylogenetic clusters A, B, and C
| Strain | Genome segment | Genotype | |||||||
|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | ||
| 338,087/2015 (GAU, Br) | C | A | B | B | B | B | B | B | a |
| 341,797/2015a (NW, Br.B) | A | C | B | C | C | C | C | C | b |
| 339,678/2015a (NW, Br.B) | A | C | B | C | C | C | C | C | b |
| 344,378/2015b (GAU, L) | C | A | B | B | B | B | B | B | a |
| 344,579/2015b (GAU, L) | C | A | B | B | B | B | B | B | a |
| 398,997/2016c (GAU, L) | A | C | B | C | C | C | C | C | b |
| N2826/2016 (GAU, Br) | A | C | B | C | C | C | C | C | b |
| 401,156/2016 (NW, L) | A | C | B | C | C | C | C | C | b |
| 402,385/2016 (NW, Br.B) | A | C | B | C | C | C | C | C | b |
| 404,573/2016† (GAU, L) | A | C | B | C | C | B | C | B | c |
| H44954/2016 (KZN, L) | B | B | A | A | A | A | A | A | d |
| 432/19/2019 (GAU, L) | C | C | B | A | C | C | C | C | e |
GAU Gauteng Province, NW North West Province, KZN KwaZulu-Natal Province, Br broilers, Br.B broiler breeders, L layers (see Table 1). Lower case bold italicised letters in the last column summarise shared genotypes
abcStrains marked with the same symbol are from the same producer/site