Table 1.
Overview of data files/data sets
| Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
| Data file 1 | Figure 1—Experimental design | png | Figshare (10.6084/m9.figshare.10001870.v3) [16] |
| Data file 2 | Figure 2—Sponge RNA extraction on gel agarose | png | Figshare (10.6084/m9.figshare.10001870.v3) |
| Data file 3 | Figure 3—Bioinformatic pipeline | png | Figshare (10.6084/m9.figshare.10001870.v3) |
| Data file 4 | Scythe_batch | sh | Figshare (10.6084/m9.figshare.10001870.v3) |
| Data file 5 | PE_sickle_prinseq_trimmomatic_batch | sh | Figshare (10.6084/m9.figshare.10001870.v3) |
| Data file 6 | allreads_trinity | .fasta | Figshare (10.6084/m9.figshare.10001870.v3) |
| Data file 7 | getit_bacteria | .pl | Figshare (10.6084/m9.figshare.10001870.v3) |
| Data file 8 | assembly_nobacteria_pass1 | .fasta | Figshare (10.6084/m9.figshare.10001870.v3) |
| Data file 9 | assembly_nobacteria_final | .fasta | Figshare (10.6084/m9.figshare.10001870.v3) |
| Data file 10 | Extract_reads_from_bam | .sh | Figshare (10.6084/m9.figshare.10001870.v3) |
| Data set 1 | All raw reads from the 20 libraries | .fastq.gz | SRA (SRP150632) https://www.ncbi.nlm.nih.gov/sra/?term=SRP150632 [17] |