Table 2.
Oligonucleotides used in this work.a
Oligonucleotide | Sequence (5′→3′) | T m (°C) | Use |
---|---|---|---|
Pm_ins‐F | TAT CTC TAG TAA GGC CTA CCC CTT AGG CTT TAT GCA AGC TTA GGA GGA AAA ACA TAT GCG | 60 | Insertion of Pm into vector pSEVA237M by site‐directed mutagenesis PCR |
Pm_ins‐R | GCC ATT TTT TGC ACT CCT GTA TCC GCT TCT TGC AAT TAA TTA AAG GCA TCA AAT AAA ACG AAA GGC TCA | 59 | |
ssr_nia‐F | CGC TAA CGA CGA TAA CTA CGC CCT GGC TGC GTA AAC TAG TCT TGG ACT CCT GTT GAT AGA | 60 | Insertion of a nia/ssrA tag into pS23·Pm‐GFP by site‐directed mutagenesis PCR |
ssr_nia‐R | GCA CGT TCA TCA GCT TGA TGC ACC ACG ACG TTG GAC TCG CCT TTG TAG AGT TCA TCC ATG CCG TGC | 57 | |
xylS·pTn7‐F† | ACG TCT TAA UTA AAC GTT CGT AAT CAA GCC ACT T | 61 | Amplification of xylS to clone into vector pTn7‐M |
xylS·pTn7‐R† | AGG ACA CUG CAC TTT ATG CTG GTT ATG C | 60 | |
pTn7·xylS‐F† | AGT GTC CUA GGC CGC GGC CGC | 63 | Amplification of pTn7‐M to insert xylS or xylS/Pm→nia |
pTn7·xylS‐R† | ATT AAG ACG UCT TGA CAT AAG CCT GTT CGG TTC | 62 | |
pTn7·nia‐F† | ACT CAG GGU ACC CGG GGA TCC TCT AGA | 58 | |
nia·pTn7‐R† | ACC CTG AGU GTA AAC AAA TTC CCC ATC AAG A | 57 | Cloning of xylS/Pm→nia |
Gm_check‐F | AGT CAG AGT TAC GGA ATT GTA GG | 55 | Checking insertion of GmR into the chromosome |
Gm_check‐R | ATT AGC TTA CGA CGC TAC ACC C | 56 | |
gfp_RBS‐F | AAT CCT AGG CCG CGA CGC ATG TTT AGG AGG AAA AAC ATA TGC GTA AAG GTG AAG AAC TGT | 63 | Cloning of msfGFP |
gfp‐R | AAG ACT AGT CAT TTA TTT GTA GAG TTC ATC CAT G | 54 | |
pS1 | AGG GCG GCG GAT TTG TCC | 60 | Check SEVA plasmids cargo |
pS2 | GCG GCA ACC GAG CGT TC | 59 |
a. Oligonucleotides designed for USER assembly are indicated with a † symbol.