Table 3.

Additive QTLs detected in this study.

Loci	QTL	Enva	Chr.b	Marker interval	Physical interval (bp)	LODc	PVE(%)d	ADDe	Donor of positive allelef	Known loci
loci1	qSH-1	WS	1	Block855-Block858	18,967,988-19,038,122	3.03	4.96	-0.1419	0
loci2	qVI-1	WS	1	Block951-Block952	20,621,649-20,655,694	4.54	5.88	-19.3173	0	qGR-1, Wang et al., 2010
	qVI-1	DS	1	Block951-Block952	20,621,649-20,655,694	3.24	4.20	-16.4009	0
loci3	qSFW-1	WS	1	Block1458-Block1495	32,722,412-33,092,963	3.64	5.19	-0.0006	0
	qSFW-1	DS	1	Block1458-Block1495	32,722,412-33,092,963	3.88	0.50	-0.0006	0
loci4	qSSD-2	WS	2	Block3971-Block4003	27,337,313-28,098,469	6.26	11.76	0.0306	2	qSDW2, Han et al., 2007
	qSSD-2	DS	2	Block3971-Block4003	27,337,313-28,098,469	5.23	10.84	0.0284	2
	qSFW-2	WS	2	Block3988-Block3998	27,829,823-27,932,432	4.66	6.75	0.0006	2
	qRSA-2	WS	2	Block3971-Block4003	27,337,313-28,098,469	3.18	5.69	0.1107	2
	qRSA-2	DS	2	Block3971-Block4003	27,337,313-28,098,469	2.99	4.92	0.1076	2
	qRV-2	WS	2	Block3978-Block3979	27,528,422-27,649,977	2.87	4.73	0.0011	2
	qRV-2	DS	2	Block3978-Block3979	27,528,422-27,649,977	3.58	5.27	0.0012	2
	qRFW-2	WS	2	Block3978-Block3979	27,528,422-27,649,977	5.77	9.28	0.0011	2
	qRFW-2	DS	2	Block3978-Block3979	27,528,422-27,649,977	4.95	8.08	0.0010	2
loci5	qSH-3	WS	3	Block5273-Block5280	19,437,008-19,449,809	3.36	5.56	0.1504	2
	qSH-3	DS	3	Block5273-Block5280	19,437,008-19,449,809	2.71	4.77	0.1346	2
	qSFW-3	WS	3	Block5273-Block5280	19,437,008-19,449,809	5.47	7.96	0.0007	2
loci6	qRD-4	WS	4	Block6990-Block7002	11,554,467-12,117,492	3.26	4.85	-0.0069	0
loci7	qRL-4-1	WS	4	Block7009-Block7015	12,294,020-12,542,201	3.61	5.86	1.1192	2
loci8	qRL-4-2	DS	4	Block7073-Block7134	13,207,405-13,517,455	4.17	4.94	1.1657	2
loci9	qGR-4-1	DS	4	Block7980-Block8015	27,396,341-28,476,977	3.51	5.93	-0.8684	0	qGP-4, Wang et al., 2010
	qGP-4-1	DS	4	Block7980-Block8015	27,396,341-28,476,977	3.40	6.75	-0.9855	0
loci10	qGR-4-2	WS	4	Block8053-Block8084	29,926,217-30,392,121	3.19	5.78	-0.6466	0
	qGP-4-2	WS	4	Block8053-Block8084	29,926,217-30,392,121	3.70	6.38	-0.8268	0
loci11	qRL-6	DS	6	Block10156-Block10159	796,395-846,337	2.63	3.07	-0.9295	0
loci12	qGI-7	WS	7	Block12037-Block12088	11,776,612-13,217,331	5.85	8.17	3.1786	2
	qGI-7	DS	7	Block12037-Block12088	11,776,612-13,217,331	5.83	8.22	3.4060	2
	qVI-7	WS	7	Block12037-Block12088	11,776,612-13,217,331	7.26	9.63	24.5986	2
	qVI-7	DS	7	Block12037-Block12088	11,776,612-13,217,331	7.41	9.96	25.1284	2
	qSFW-7	WS	7	Block12037-Block12088	11,776,612-13,217,331	2.59	3.65	0.0005	2
loci13	qSH-7	DS	7	Block12131-Block12277	14,769,869-17,528,501	2.94	5.15	0.1385	2
loci14	qSFW-8	WS	8	Block14052-Block14057	20,082,017-20,132,544	3.93	5.63	-0.0006	0
	qSFW-8	DS	8	Block14052-Block14058	20,082,017-20,140,755	9.18	27.43	-0.0041	0
	qRV-8	DS	8	Block14052-Block14057	20,082,017-20,132,544	2.82	4.14	-0.0011	0
loci15	qGI-9-1	DS	9	Block14594-Block14626	1,081,787-1,914,120	2.79	3.85	2.3315	2
loci16	qGI-9-2	WS	9	Block15150-Block15163	9,238,348-9,603,614	3.16	4.31	2.3156	2
loci17	qVI-9-1	DS	9	Block15318-Block15321	11,394,951-11,459,454	3.20	4.15	16.2650	2
loci18	qVI-9-2	WS	9	Block15394-Block15400	11,812,305-11,857,467	2.82	3.60	15.0605	2
loci19	qRL-9	DS	9	Block15759-Block15762	17,901,269-18,025,376	3.39	3.98	-1.0451	0
loci20	qRD-9	WS	9	Block15929-Block15931	20,396,914-20,444,283	3.81	5.71	0.0074	2
loci21	qGR-9	WS	9	Block16052-Block16053	21,755,498-21,895,114	2.54	4.63	0.5783	2
loci22	qGP-9	WS	9	Block16059-Block16061	22,015,280-22,077,000	2.57	4.42	0.6892	2

^aEnvironment: WS represents the wet season in 2017; DS represents the dry season in 2017.

^bChr, chromosome.

^cLOD, logarithm of odds.

^dADD, additive effect; positive values indicate effects of alleles from regions with marker type 2.

^ePVE (%), phenotypic variation explained (%).

^fDonor of positive allele; the source of increasing allele effects was an allele from regions with either marker type 2 or marker type 0.