Table 4.
Enriched biological processes of hypermethylated genes in SO compared to SOA (> 20% methylation difference, n = 40)
#term ID | Term description | Observed gene count | False discovery rate |
---|---|---|---|
GO:0048846 | Axon extension involved in axon guidance | 3 | 0.0012 |
GO:0009987 | Cellular process | 35 | 0.0027 |
GO:0050919 | Negative chemotaxis | 3 | 0.0125 |
GO:0070100 | Negative regulation of chemokine-mediated signaling pathway | 2 | 0.0125 |
GO:0021825 | Substrate-dependent cerebral cortex tangential migration | 2 | 0.0135 |
GO:0035385 | Roundabout signaling pathway | 2 | 0.0135 |
GO:0060560 | Developmental growth involved in morphogenesis | 4 | 0.0135 |
GO:0023052 | Signaling | 17 | 0.0139 |
GO:0007154 | Cell communication | 17 | 0.0185 |
GO:0007268 | Chemical synaptic transmission | 5 | 0.0185 |
GO:0042118 | Endothelial cell activation | 2 | 0.0185 |
GO:1902668 | Negative regulation of axon guidance | 2 | 0.0185 |
GO:0003180 | Aortic valve morphogenesis | 2 | 0.0244 |
GO:0022008 | Neurogenesis | 10 | 0.0244 |
GO:0001657 | Ureteric bud development | 3 | 0.0322 |
GO:0001964 | Startle response | 2 | 0.0387 |
GO:0007399 | Nervous system development | 11 | 0.0387 |
GO:0035235 | Ionotropic glutamate receptor signaling pathway | 2 | 0.0387 |
GO:0048699 | Generation of neurons | 9 | 0.0387 |
GO:0050789 | Regulation of biological process | 27 | 0.0387 |
GO:0050794 | Regulation of cellular process | 26 | 0.0387 |
GO:0090287 | Regulation of cellular response to growth factor stimulus | 4 | 0.0387 |
GO:0120033 | Negative regulation of plasma membrane bounded cell projection assembly | 2 | 0.0387 |
GO:0008045 | Motor neuron axon guidance | 2 | 0.0398 |
GO:0030182 | Neuron differentiation | 7 | 0.0398 |
GO:0030517 | Negative regulation of axon extension | 2 | 0.0398 |
GO:0035249 | Synaptic transmission, glutamatergic | 2 | 0.0398 |
GO:0090288 | Negative regulation of cellular response to growth factor stimulus | 3 | 0.046 |
GO:0007267 | Cell-cell signaling | 6 | 0.049 |
GO:0021884 | Forebrain neuron development | 2 | 0.0494 |