Table. Characteristics of avian influenza viruses in samples from diseased poultry, Egypt*.
| Strain | Subtype | Collection date | Host species | Governorate | Flock size | Mortality rate, % | Genome sequence | Clade |
|---|---|---|---|---|---|---|---|---|
| A/duck/Egypt/AR518/2017 | H5N8 | 2017 Mar 15 | Duck | Giza | 3,000 | 40 | Full | 2.3.4.4b |
| A/duck/Egypt/AR560/2018 | H5N8 | 2018 May 20 | Duck | Giza | 5,000 | 35 | Full | 2.3.4.4b |
| A/turkey/Egypt/AR550/2018 | H5N8 | 2018 Mar 2 | Turkey | Beni-Suef | 5,000 | 100 | Full | 2.3.4.4b |
| A/duck/Egypt/AR526/2017 | H5N1 | 2017 Mar 20 | Duck | Beni-Suef | 3,000 | 15 | Full | 2.2.1.2 |
| A/chicken/Egypt/AR528/2017 | H5N1 | 2017 Mar 22 | Chicken, layer | Beni-Suef | 5,000 | 30 | Full | 2.2.1.2 |
| A/chicken/Egypt/AR544/2018 | H9N2 | 2018 Jan 20 | Chicken, broiler | Giza | 10,000 | 25 | Full | G1.B |
| A/chicken/Egypt/AR545/2018 | H9N2 | 2018 Mar 25 | Chicken, broiler | Qualiobia | 5,000 | 25 | Full | G1.B |
| A/chicken/Egypt/AR546/2018 | H9N2 | 2018 Mar 22 | Chicken, broiler | El-Menia | 8,000 | 10 | Full | G1.B |
| A/chicken/Egypt/Al00994/2019 | H5N2 | 2019 Jan 19 | Chicken, broiler | Beheira | 17,000 | 47 | Full | 2.3.4.4b |
| A/chicken/Egypt/AI00986/2019 | H5N2 | 2019 Jan 5 | Chicken, broiler | Fayoum | 10,000 | 5 | HA (partial) | 2.3.4.4b |
| A/chicken/Egypt/AI00987/2019 | H5, H9, N2 | 2019 Jan 9 | Chicken, broiler | Beheira | 7,000 | 15 | HA (partial) | 2.3.4.4b |
| A/chicken/Egypt/AI00988/2019 | H5, H9, N2 | 2019 Jan 19 | Chicken, broiler | Beheira | 8,000 | 20 | HA (partial) | 2.3.4.4b |
| A/chicken/Egypt/AI00989/2019 | H5, H9, N2 | 2019 Jan 27 | Chicken, broiler | El-Menia | 6,000 | 14 | HA (partial) | 2.3.4.4b |
| A/chicken/Egypt/AI00991/2019 | H5, H9, N2 | 2019 Feb 16 | Chicken, broiler | Beni-Suef | 74,000 | 16 | NA* | NA |
| A/chicken/Egypt/AI00992/2019 | H5N2 | 2019 Mar 3 | Chicken, broiler | Beheira | 5,000 | 15 | HA (partial) | 2.3.4.4b |
| A/duck/Egypt/AI00993/2019 | H5, N8, N2 | 2019 Jan 14 | Chicken, broiler | Giza | 4,000 | 15 | NA | NA |
| A/chicken/Egypt/AI00995/2019 | H5, H9, N2 | 2019 Jan 14 | Chicken, broiler | Beheira | 33,000 | 33.3 | NA | NA |
| A/chicken/Egypt/AI00996/2019 | H5,H9, N2 | 2019 Jan 15 | Chicken, broiler | Beheira | 10,000 | 60 | NA | NA |
| A/chicken/Egypt/AI00997/2019 | H5, N8, H9, N2 | 2019 Mar 9 | Chicken, broiler | Dakhalia | 40,000 | 7.5 | NA | NA |
*HA, hemagglutinin; NA, not available.