Table 1.
Condition | Sample | Number of CCS reads | Number of processed readsa | Number of OTUs | Chao1 | Simpson | Shannon | Good's coverage |
---|---|---|---|---|---|---|---|---|
D6C | D6C‐1 | 18,213 | 13,317 | 768 | 989 | 0.9053 | 5.6155 | 0.9805 |
D6C‐2 | 21,716 | 15,085 | 211 | 335 | 0.6844 | 2.4380 | 0.9928 | |
D6C‐3 | 11,873 | 8,582 | 172 | 430 | 0.7662 | 2.9071 | 0.9878 | |
D6C‐4 | 35,302 | 26,091 | 391 | 552 | 0.8109 | 3.7021 | 0.9937 | |
D6C‐5 | 29,280 | 21,091 | 996 | 1,249 | 0.9261 | 6.0606 | 0.9845 | |
D6H | D6H‐1 | 22,349 | 15,984 | 948 | 1,331 | 0.9397 | 6.4742 | 0.9769 |
D6H‐2 | 16,886 | 11,476 | 746 | 1,108 | 0.9293 | 5.9003 | 0.9695 | |
D6H‐3 | 11,952 | 8,463 | 1,072 | 1,751 | 0.9783 | 7.4745 | 0.9330 | |
D6H‐4 | 13,447 | 9,438 | 573 | 772 | 0.9274 | 5.9100 | 0.9782 | |
D6H‐5 | 23,381 | 15,547 | 914 | 1,334 | 0.8657 | 5.5290 | 0.9742 | |
D13C | D13C‐1 | 21,138 | 15,480 | 234 | 417 | 0.7780 | 3.5362 | 0.9935 |
D13C‐2 | 16,216 | 12,188 | 408 | 676 | 0.7915 | 3.6422 | 0.9833 | |
D13C‐3 | 26,510 | 16,924 | 1,046 | 1,322 | 0.8877 | 5.2677 | 0.9750 | |
D13C‐4 | 18,187 | 11,459 | 816 | 1,328 | 0.8103 | 4.5242 | 0.9588 | |
D13H | D13H‐1 | 27,513 | 19,834 | 1,602 | 2,144 | 0.9661 | 7.7104 | 0.9688 |
D13H‐2 | 21,953 | 14,759 | 1,187 | 1,725 | 0.9712 | 7.2585 | 0.9648 | |
D13H‐3 | 10,342 | 5,652 | 829 | 1,507 | 0.9108 | 6.8358 | 0.8563 | |
D13H‐4 | 10,996 | 7,580 | 772 | 1,104 | 0.9713 | 7.0518 | 0.9557 | |
Total: | 357,254 | 248,950 |
After removal of chimeras and reads shorter than 1,000 bases.