Table 2.
Putative proteinase families predicted in the Entodinium caudatum transcriptome
| Catalytic Type | Family | No. of Transcripts | No. of transcripts with SPsa | No. of transcripts with TMsb | No. of transcripts with both SPs and TMs |
|---|---|---|---|---|---|
| Aspartic (A) | A01A | 27 | 10 | 12 | 7 |
| A01B | 7 | 2 | |||
| A02B | 1 | 1 | |||
| A22A | 12 | ||||
| A22B | 4 | 2 | 1 | ||
| A28 | 2 | 1 | |||
| Total | 52 | 17 | 8 | ||
| Cysteine (C) | C01A | 41 | 15 | 6 | 4 |
| C01B | 2 | ||||
| C02A | 34 | 2 | |||
| C04 | 6 | ||||
| C12 | 3 | ||||
| C13 | 7 | 1 | 3 | 1 | |
| C19 | 222 | 1 | 8 | ||
| C23 | 2 | ||||
| C26 | 9 | 2 | 3 | ||
| C40 | 8 | 2 | 1 | 1 | |
| C48 | 28 | ||||
| C50 | 1 | ||||
| C54 | 32 | ||||
| C56 | 3 | ||||
| C59 | 1 | ||||
| C65 | 3 | ||||
| C67 | 1 | ||||
| C69 | 6 | ||||
| C78 | 1 | ||||
| C83 | 1 | ||||
| C85A | 8 | ||||
| C87 | 1 | ||||
| C95 | 4 | 1 | 2 | ||
| C97 | 2 | ||||
| Total | 422 | 35 | 21 | 8 | |
| Metallo (M) | M01 | 14 | 2 | ||
| M03A | 3 | 1 | |||
| M03B | 4 | ||||
| M08 | 34 | 10 | 5 | 3 | |
| M12B | 1 | ||||
| M14A | 2 | ||||
| M14B | 4 | ||||
| M14D | 2 | ||||
| M15C | 1 | ||||
| M15D | 2 | 1 | |||
| M16A | 9 | 1 | |||
| M16B | 1 | ||||
| M16C | 2 | ||||
| M16X | 2 | ||||
| M18 | 1 | ||||
| M20C | 1 | ||||
| M20X | 2 | ||||
| M24A | 6 | 2 | |||
| M24B | 1 | ||||
| M24X | 4 | 1 | |||
| M28A | 1 | ||||
| M28X | 1 | ||||
| M38 | 2 | ||||
| M41 | 1 | ||||
| M43A | 1 | ||||
| M48A | 2 | 2 | |||
| M54 | 4 | ||||
| M56 | 1 | 1 | |||
| M67A | 3 | 1 | |||
| M76 | 1 | ||||
| M79 | 4 | 3 | |||
| Total | 116 | 12 | 17 | 3 | |
| Mixed (P) | P01 | 1 | 1 | ||
| Total | 1 | 1 | |||
| Serine (S) | S01A | 4 | |||
| S01B | 30 | ||||
| Total | 34 | ||||
| Total | 615 |
a SP signal peptide. bTM transmembrane domains