Fig. 3.

Near–full-length (NFL) proviral structures. Structures of proviruses within cell clones aligned to the HXB2 reference sequence (adapted from Los Alamos National Laboratory). Corresponding rake ID (Fig. 4), integration site (gene/nearest gene, chromosome), and cell source (PB, LN) are given. A mapped deletion (red box) denotes sequence obtained spanning the deletion. Probable deletion (yellow box) denotes failure at either amplification or sequencing. All proviruses detected were shown to be defective except for the AMBI-1 provirus and the newly identified ABCA11P provirus in R-09. LN, lymph node; PB, peripheral blood.