Table 1.
Ligand-binding affinity of QTY code designed chemokine receptor (E. coli)
CCL5* Kd, nM | CXCL11 Kd, nM | CXCL12* Kd, nM | CXCL13 Kd, nM | CCL27 Kd, nM | CCL28 Kd, nM | gp41-120 Kd, nM | |
CXCR4 native | ∼5 | ∼200† | |||||
CXCR4QTY buffer | 17.3 ± 4.2 | 7.0 ± 1.9 | |||||
CXCR4QTY serum | 31.4 ± 12.2 | 12.7 ± 2.6 | |||||
CXCR5 native | ∼50.5 | ||||||
CXCR5QTY buffer | 5.7 ± 2.2 | ||||||
CXCR5QTY serum | 10.1 ± 2.6 | ||||||
CXCR7 native | ∼8 | ∼4.5 | N/A | ||||
CXCR7QTY buffer | 6.4 ± 1.2 | 6.7 ± 2.2 | 34.3 ± 6.1 | ||||
CXCR7QTY serum | 51.5 ± 11.8 | 16.9 ± 3.4 | 50.0 ± 11.1 | ||||
CCR5 native | ∼4 | ∼10 | |||||
CCR5QTY buffer | 6.8 ± 2.0 | 1.3 ± 0.5 | |||||
CCR5QTY serum | 29.0 ± 8.9 | 2.1 ± 0.6 | |||||
CCR10 native | ∼5.6 | ∼38 | |||||
CCR10QTY buffer | 4.2 ± 1.4 | 38.5 ± 8.0 | |||||
CCR10QTY serum | 6.2 ± 2.4 | 52.7 ± 7.1 |
CCL5 is also called “Rantes,” and CXCL12 is also called “SDF1α” in the literature.
The Kd ∼200 nM was measured by a cell-based assay.
All QTY code designed chemokine receptors were purified from E. coli inclusion bodies and renatured in refolding buffer.