Table 1.
Single cell RNA-Seq datasets used
| Number | Author | Tissue | Cells | MTU | Notes |
|---|---|---|---|---|---|
| 1 | Zheng [5] | ERCC | 1015 | 11,125 | Spike-in only; technical negative control |
| 2 | Zheng [5] | Monocytes | 2612 | 782 | 1 cell type; biological negative control |
| 3 | Tung [32] | iPSCs | 57 | 24,170 | 1 cell type; biological negative control |
| 4 | Duo [15] | PBMCs | 3994 | 1215 | 4 equal clusters of FACS-purified cells |
| 5 | Duo [15] | PBMCs | 3994 | 1298 | 8 equal clusters of FACS-purified cells |
| 6 | Haber [33] | Intestine | 533 | 3755 | Authors computationally identified 12 types |
| 7 | Muraro [34] | Pancreas | 2282 | 18,795 | Authors computationally identified 9 types |
| 8 | Zheng [5] | PBMCs | 68,579 | 1292 | Benchmarking computational speed |
Species: all H. sapiens except Haber (M. musculus). Protocols: all 10 × except Muraro (CEL-Seq2) and Tung (SMARTer). MTU median total UMI count. iPSCs induced pluripotent stem cells