Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference |
Identifiers | Additional information |
|---|---|---|---|---|
| Genetic reagent (C. elegans) | N2 | wild-type strain | ||
| Genetic reagent (C. elegans) | QX1211 | Wild isolate | ||
| Genetic reagent (C. elegans) |
MY16 | Wild isolate | ||
| Genetic reagent (C. briggsae) |
AF16 | wild-type strain | ||
| Commercial assay or kit | Illumina TruSeq Stranded Total RNA Library Prep Gold Kit | Illumina | Illumina: 20020598 |
|
| Software, algorithm |
FigTree v1.4.4 | http://tree.bio.ed.ac.uk/software/figtree/ | ||
| Software, algorithm | Bowtie2 v2.3.3.1 | Langmead and Salzberg, 2012 | Sequence alignment | |
| Software, algorithm | MEME v5.0.3 | Bailey and Elkan, 1994 | Motif finder | |
| Software, algorithm | Tomtom v5.0.2 | Gupta et al., 2007 | Motif comparison | |
| Software, algorithm | Cistrome | Liu et al., 2011 | Generation of heat maps | |
| Software, algorithm | DESeq2 v1.18.1 | Love et al., 2014 | Differential expression analysis of RNA-seq | |
| Software, algorithm | Delly v0.8.1 | Rausch et al., 2012 | Genome comparisons | |
| Software, algorithm | bcftools v1.9 | Narasimhan et al., 2016 | Genome comparisons |