Table 1. Genetic pathways enriched with 47 genes linked to both OCD and ASD.
Name | # of entities | Overlap | Percent overlap | P-value | Jaccard similarity | |
---|---|---|---|---|---|---|
2017 updated database | GO: behavior | 759 | 32 | 4 | 1.35E-32 | 0.041344 |
GO: regulation of neurotransmitter levels | 339 | 23 | 6 | 3.89E-26 | 0.063361 | |
GO: synaptic signaling | 387 | 23 | 5 | 4.29E-25 | 0.055961 | |
GO: trans-synaptic signaling | 387 | 23 | 5 | 4.29E-25 | 0.055961 | |
GO: cell–cell signaling | 741 | 27 | 3 | 4.82E-25 | 0.03548 | |
GO: learning or memory | 339 | 22 | 6 | 7.56E-25 | 0.06044 | |
GO: signaling | 815 | 27 | 3 | 4.64E-24 | 0.032335 | |
GO: cognition | 379 | 22 | 5 | 6.37E-24 | 0.054455 | |
GO: regulation of secretion | 985 | 27 | 2 | 4.45E-22 | 0.026866 | |
GO: regulation of secretion by cell | 888 | 26 | 2 | 8.37E-22 | 0.028603 | |
2019 updated database | GO: behavior | 759 | 26 | 3 | 8.44E-24 | 0.033505 |
GO: regulation of neurotransmitter levels | 339 | 21 | 6 | 9.71E-24 | 0.058172 | |
GO: learning or memory | 339 | 21 | 6 | 9.71E-24 | 0.058172 | |
GO: regulation of secretion | 985 | 27 | 2 | 4.6E-23 | 0.026973 | |
GO: cognition | 379 | 21 | 5 | 6.26E-23 | 0.052369 | |
GO: regulation of secretion by cell | 888 | 26 | 2 | 8.1E-23 | 0.028729 | |
GO: cell–cell signaling | 741 | 24 | 3 | 1.12E-21 | 0.031579 | |
GO: signaling | 815 | 24 | 2 | 9.14E-21 | 0.028777 | |
GO: memory | 162 | 16 | 9 | 9.14E-21 | 0.084656 | |
GO: synaptic signaling | 387 | 19 | 4 | 9.42E-20 | 0.046229 |
For each pathway/Go term, the P-value was calculated using Fisher-exact test against the hypothesis that a randomly selected gene group of the same size (47) can generate a same or higher overlap with the corresponding pathway/Go term. All these pathways/Go terms passed the FDR correction (q = 0.05).