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. 2019 Dec 24;12(Suppl 9):181. doi: 10.1186/s12920-019-0636-y

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Comparison between SNVs identified by the three somatic variant callers. The Y-axis of each scatter plot indicates the read depth of SNVs in tumour tissue sample, the X-axis shows the VAF of each SNV. The dots represent SNVs from tumour-blood pairs. The colour indicates the variant calling method. a All callers: SNVs identified by all three callers; Two callers: SNVs identified by any two of the three callers. b MuTect2: SNVs uniquely identified by MuTect2. c Torrent: SNVs uniquely identified by TVC. d VarScan2: SNVs uniquely identified by VarScan2