Table 3.
SNPs identified for the resistance to penicillin (PEN) by DNP-AAP
| ID Range | ID | AAP | Genes | Annotations | Known |
|---|---|---|---|---|---|
| 38424 | 0.344 | NGK_2469 | conserved hypothetical protein | ||
| 33601 | 0.342 | NGK_2170 | outer membrane preprotein PIIc | ||
| 18799 | 0.330 | gyrA | DNA gyrase subunit A | ||
| 29502 | 0.322 | NGK_1906 | monofunctional biosynthetic peptidoglycan | ||
| transglycosylase | |||||
| 29504 | 0.251 | NGK_1906 | monofunctional biosynthetic peptidoglycan | ||
| transglycosylase | |||||
| [2749,2763] | 2755 | 0.236 | ponA | penicillin-binding protein 1A | ✓ |
| 35095 | 0.219 | NGK_2270 | adhesin MafA | ||
| 10120 | 0.213 | NGK_0679 | putative phage associated protein | ||
| 40335 | 0.204 | intergenic between NGK_2581 and NGK_2582 ∗ | |||
| 6817 | 0.203 | NGK_0423 | 23S rRNA pseudo-uridine 1911/1915/1917 | ||
| synthase |
Annotations are from EnsemblBacteria. The column “ID Range” lists the ranges of SNPs that fall in known AMR-associated genes (only) in our data. ID: ID of Identified SNP
*NGK_2581: Putative hemoglobin receptor component precursor HpuA; NGK_2582: Conserved hypothetical protein