Table 4.
SNPs identified for the resistance to tetracycline (TET) by DNP-AAP
| ID Range | ID | AAP | Genes | Annotations | Known |
|---|---|---|---|---|---|
| 27095 | 0.470 | intergenic between NGK_1771 and NGK_1772 ∗ | |||
| 21468 | 0.205 | NGK_1458 | putative phage associated protein | ||
| [37926,37927] | 37927 | 0.196 | rpsJ | 30S ribosomal protein S10 | ✓ |
| 29960 | 0.159 | NGK_1968 | IS1016 transposase | ||
| 37300 | 0.150 | NGK_2398 | methionyl-tRNA formyltransferase | ||
| 40041 | 0.131 | NGK_2557 | hemoglobin/transferrin/lactoferrin receptor | ||
| protein | |||||
| 21467 | 0.121 | NGK_1458 | putative phage associated protein | ||
| 9785 | 0.120 | NGK_0668 | putative phage associated protein | ||
| 9787 | 0.120 | NGK_0668 | putative phage associated protein | ||
| 18761 | 0.119 | NGK_1227 | putative HTH-type transcriptional regulator | ||
| NMB1378 |
Annotations are from EnsemblBacteria. The column “ID Range” lists the ranges of SNPs that fall in known AMR-associated genes (only) in our data. ID: ID of Identified SNP
*NGK_1771: transferrin-binding protein A; NGK_1772: TbpB