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. 2019 Dec 23;20:297. doi: 10.1186/s13059-019-1917-7

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — Upper panel: relative advantages of each tool. Note, precision and coherence are not exclusive; some tools like FlowSOM and PhenoGraph are both precise and coherent. Position on the graph roughly represents relative relation. Lower panel: summary of characteristics of each tool and suggested decision pipeline to choose the right tool