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. 2019 Dec 23;20:1014. doi: 10.1186/s12864-019-6399-1

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Phylogenetic tree of the 71 ST87 strains. The tree was constructed using the maximum likelihood method based on core genome SNPs. The strains isolated from different regions were marked with different colors (red for Sichuan, blue for Beijing, green for Zhejiang, brown for Shanghai and blank for Fujian, Henan, Hubei and Jiangsu). The strains isolated from clinical cases were highlighted. The strains harbored the plasmid were labeled with a red solid dot. The corresponding putative prophage and the profile of spacers were shown alongside the dendrogram on the right