Supplementary Table 4.

Analysis results for SNPs related to pCD.

Name	Chr. No.	Gene or locus	Major/minor allele	Risk allele	Case RAF	Control RAF	OR (95% CI)	P value allele	P value genotype
rs72553867	chr5	IRGM	C/A	A	0.194	0.125	1.685 (1.188–2.390)	0.003	0.002a
rs4958847	chr5	IRGM	A/G	A	0.688	0.617	1.365 (1.047–1.778)	0.021	0.025c
rs4409764	chr10	NKX2–3	G/T	T	0.558	0.487	1.329 (1.033–1.709)	0.027	0.007a
rs888208	chr10	NKX2–3	A/G	A	0.656	0.588	1.338 (1.032–1.735)	0.028	0.004a
rs3731772	chr2	AOX1	T/C	T	0.681	0.615	1.335 (1.025–1.740)	0.032	0.032a
rs1292053	chr17	TUBD1	G/A	A	0.482	0.417	1.300 (1.010–1.674)	0.041	0.035c
rs3894326	chr19	FUT3	A/T	A	0.880	0.836	1.438 (1.001–2.064)	0.049	0.045c
rs10883365	chr10	NKX2–3	A/G	G	0.548	0.496	1.234 (0.957–1.590)	0.105	0.033a
rs3181374	chr9	TNFSF8	A/G	A	0.687	0.642	1.226 (0.939–1.600)	0.135	0.069a
rs11235667	chr11	ATG16L2-FCHSD2	A/G	A	0.877	0.844	1.314 (0.914–1.887)	0.139	0.148c
rs3749172	chr2	GPR35	C/A	A	0.387	0.343	1.209 (0.926–1.577)	0.162	0.055b
rs2241880	chr2	ATG16L1	A/G	G	0.394	0.355	1.185 (0.915–1.534)	0.199	0.182b
rs153109	chr16	IL27	T/C	T	0.613	0.573	1.181 (0.914–1.526)	0.204	0.094a
rs1800630	chr6	TNF	C/A	C	0.857	0.828	1.242 (0.881–1.752)	0.216	0.168b
rs11235604	chr11	ATG16L2	C/T	C	0.875	0.848	1.256 (0.873–1.805)	0.219	0.225c
rs7282490	chr21	ICOSLG	G/A	A	0.468	0.429	1.168 (0.907–1.504)	0.228	0.205b
rs2107538	chr17	CCL5	C/T	T	0.360	0.325	1.168 (0.897–1.522)	0.249	0.239c
rs10114470	chr9	TNFSF15	C/T	C	0.633	0.598	1.160 (0.897–1.500)	0.259	0.128a
rs514000	chr18	PTPN2	T/C	T	0.600	0.564	1.160 (0.895–1.501)	0.262	0.106a
rs11209032	chr1	IL23R-IL12RB2	A/G	G	0.464	0.429	1.149 (0.893–1.478)	0.281	0.275a

SNPs are ordered according to P values.

^ap value for the dominant model;

^bp value for the regressive model;

^cp value for the additive model.

Chr – chromosome; RAF – risk allele frequency