Table 3.
Top 10 differentially expressed protein-coding genes and their associated lincRNAs.
| Up-regulated | |||||
|---|---|---|---|---|---|
| protein-coding gene | logFC | Chromosome | Associated lincRNA | Novel | logFC |
| GNLY | 5.501274 | chr2 | XLOC_000450 | TRUE | 4.215082 |
| IL12RB2 | 4.413091 | chr1 | XLOC_000014 | TRUE | 2.459516 |
| GREM1 | 4.393926 | chr15 | ENSG00000259721.1 | FALSE | 4.009044 |
| CLEC4E | 4.07331 | chr12 | ENSG00000255801.1 | FALSE | 4.662458 |
| JAKMIP1 | 3.915142 | chr4 | ENSG00000251408.1 | FALSE | 3.129591 |
| JAKMIP1 | 3.915142 | chr4 | ENSG00000249896.1 | FALSE | 3.612352 |
| CCR8 | 3.728164 | chr3 | XLOC_000595 | TRUE | 3.337482 |
| HOXB13 | 3.474395 | chr17 | ENSG00000242407.1 | FALSE | 2.949072 |
| BATF | 3.170261 | chr14 | XLOC_000261 | TRUE | 3.499493 |
| ZNF812 | 2.987816 | chr19 | XLOC_000416 | TRUE | 2.144413 |
| Downregulated | |||||
| Protein coding gene | logFC | Chromosome | Associated lincRNA | Novel | logFC |
| G6PC | -6.01619 | chr17 | ENSG00000213373.3 | FALSE | -2.81641 |
| APOB | -5.5889 | chr2 | ENSG00000261012.2 | FALSE | -4.36301 |
| COL2A1 | -4.52718 | chr12 | ENSG00000258203.1 | FALSE | -2.68737 |
| OSR2 | -4.22478 | chr8 | ENSG00000271930.1 | FALSE | -3.3486 |
| PAQR5 | -4.19728 | chr15 | ENSG00000259504.1 | FALSE | -1.46608 |
| FRMD1 | -4.11944 | chr6 | XLOC_000756 | TRUE | -4.18568 |
| DAB1 | -4.04047 | chr1 | ENSG00000227935.1 | FALSE | -2.76251 |
| ALDOB | -3.85788 | chr9 | XLOC_000895 | TRUE | -2.97737 |
| SCIN | -3.79371 | chr7 | ENSG00000229233.1 | FALSE | -4.70435 |
| PHYHIPL | -3.78832 | chr10 | XLOC_000135 | TRUE | -3.22042 |