Table 2.
Primers used for amplification of the ToxA, ToxB and toxb genes in Ptr isolates.
| Gene | Primer for singleplex PCR | Sequence | Estimated band size (bp) |
|---|---|---|---|
| ToxA | TOXA192 | 5′-CGT CCG GCT ACC TAG CAA TA-3′ | 964 |
| TOXA1155 | 5′-TTG TGC TCC TCC TTC TCG AT-3′ | ||
| ToxA | ToxA1 | 5′-GTC ATG CGT TCT ATC CTC G-3′ | |
| ToxA2 | 5′-CCT ATA GCA CCA GGT CGT CC-3′ | 294 | |
| ToxB | ToxB1 | 5′-GAC TAC CAT GCT ACT TGC TGT G-3′ | |
| ToxB2 | 5′-AAC AAC GTC CTC CAC TTT GC-3′ | 245 | |
| toxb | 90-2F1 | 5′-AAG TGG TCA TTG CGA CTG G-3′ | |
| 90-2R1 | 5′-CCT CCA CTT GCC AAA CTC TC-3′ | 157 | |
| Gene | Primer for multiplex PCR | Sequence | Estimated band size (bp) |
| CHS-1 | CHS-79F | 5′-TGGGGCAAGGATGCTTGGAAGAAG-3′ | 275 |
| CHS-354R | 5′-TGGAAGAACCATCTGTGAGAGTTG-3′ | ||
| ToxA | TA51F | 5′-GCGTTCTATCCTCGTACTTC-3′ | 573 |
| TA52R | 5′-GCATTCTCCAATTTTCACG-3 | ||
| ToxB | TB71F | 5′-GCTACTTGCTGTGGCTATC-3 | 232 |
| TB60R | 5′-ACTAACAACGTCCTCCACTTTG-3′ | ||
| toxb | TB71F | 5′-GCTACTTGCTGTGGCTATC-3 | 232 |
| TB58R | 5′-TATGAATGATTGACTGGGGTTA-3′ |