Table 4.
Overall comparison of compressed size and the relative gain for different methods under different reference genomes.
| Reference | Original file size (MB) | Compressed file size (MB) by | |||||||
|---|---|---|---|---|---|---|---|---|---|
| iDoComp | GDC2 | ERGC | NRGC | HiRGC | SCCG | HRCM-S | HRCM-B | ||
| hg17 | 20,966.28 | 517.43 | 1570.94 | 2220.85 | 1952.05 | 103.62 | 89.09 | 99.66 | 80.13 |
| 84.51% | 94.90% | 96.39% | 95.90% | 22.67% | 10.06% | 19.60% | |||
| hg18 | 20,962.74 | 506.75 | 1564.89 | 1498.22 | 1237.86 | 97.27 | 82.05 | 96.55 | 77.89 |
| 84.63% | 95.02% | 94.80% | 93.71% | 19.92% | 5.07% | 19.32% | |||
| hg19 | 20,947.88 | 581.90 | 1610.37 | 1826.78 | 1179.24 | 95.57 | 81.56 | 90.89 | 77.43 |
| 86.69% | 95.19% | 95.76% | 93.43% | 18.98% | 5.07% | 14.81% | |||
| hg38 | 20,955.10 | 526.98 | 1659.51 | 1708.70 | 1247.31 | 96.78 | 81.93 | 96.73 | 75.38 |
| 85.70% | 95.46% | 95.59% | 93.96% | 22.11% | 7.99% | 22.07% | |||
| K131 | 20,972.50 | 1338.91 | 1570.45 | 1874.15 | 1172.16 | 124.20 | 108.53 | 132.50 | 91.80 |
| 93.14% | 94.15% | 95.10% | 92.17% | 26.08% | 15.42% | 30.71% | |||
| K224 | 20,972.51 | 1284.20 | 1540.93 | 1897.95 | 1172.65 | 124.97 | 109.44 | 133.70 | 93.56 |
| 92.71% | 93.93% | 95.07% | 92.02% | 25.13% | 14.50% | 30.02% | |||
| YH | 20,972.51 | 399.29 | 1643.71 | 1840.61 | 1171.03 | 128.47 | 113.26 | 134.50 | 93.38 |
| 76.61% | 94.32% | 94.93% | 92.03% | 27.31% | 17.56% | 30.58% | |||
| HuRef | 20,965.32 | 824.15 | 1501.46 | 2911.90 | 2295.88 | 146.15 | 129.33 | 152.50 | 97.41 |
| 88.18% | 93.51% | 96.65% | 95.76% | 33.35% | 24.68% | 36.13% | |||
Bold indicates the best value of the case.