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. 2018 Nov 5;35(11):1852–1861. doi: 10.1093/bioinformatics/bty921

Fig. 5.

Fig. 5.

The effectiveness of clustering methods in finding high-risk individuals. The average number of new infections between years 9 and 10 of the simulation caused by individuals infected at year 9 in growing clusters. We select 1000 individuals from clusters, inferred by either HIV-TRACE or TreeCluster, that have the highest growth rate (ties broken randomly). As a baseline control, the average number of infections over all individuals (similar to expectations under a random selection) is shown as well. For a cluster with nt members at year t, growth rate is defined as n9n8n9. The columns show varying expected degree (i.e. number of sexual partners), and all other parameters are their base values