Table 3.

Summary of DESeq2 analysis results, comparing the relative abundance of individual endosphere and rhizosphere bacterial and fungal OTUs between the wilt resistant and susceptible cotton cultivars.

Organisms	Number of OTUs
	Total	After DESeq2 filtering	Significantly different	Resistant > susceptible
Endosphere bacteria	607	313	80	77
Rhizosphere bacteria	3,768	1,650	136	52
Endosphere fungi	743	709	83	29
Rhizosphere fungi	2,286	688	54	16