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. 2019 Dec 20;9:1454. doi: 10.3389/fonc.2019.01454

Table 2.

Sequences of insertions encoding shRNA, targeting IRF3/7, TLR7/8, NOD2, RIG-I, MDA5, and PKR genes, and shRNA with scrambled sequence.

Designation Sequence of shRNA encoding insertion
Scr 5′-p-GATCCCAAGTCTCGTATGTAGTGGTTCAAGAGACCACTACATACGAGACTTGTTTTTG-3′
        3′-GGTTCAGAGCATACATCACCAAGTTCTCTGGTGATGTATGCTCTGAACAAAAACTTAA-p-5′
TLR7
(4,579–4,597)
5′-p-GATCCGGAGAAGAAACCAAAGTTTTTCAAGAGAAAACTTTGGTTTCTTCTCCTTTTTG-3′
        3′-GCCTCTTCTTTGGTTTCAAAAAGTTCTCTTTTGAAACCAAAGAAGAGGAAAAACTTAA-p-5′
TLR8
(579–597)
5′-p-GATCCGGGCATTTCAAGACTTATATTCAAGAGATATAAGTCTTGAAATGCCCTTTTTG-3′
        3′-GCCCGTAAAGTTCTGAATATAAGTTCTCTATATTCAGAACTTTACGGGAAAAACTTAA-p-5′
PKR
(2,133–2,152)
5′-p-GATCCCGACCTAACACATCTGAAATTCAAGAGATTTCAGATGTGTTAGGTCGTTTTTG-3′
        3′-GGCTGGATTGTGTAGACTTTAAGTTCTCTAAAGTCTACACAATCCAGCAAAAACTTAA-p-5′
MDA5
(3,253–3,272)
5′-p-GATCCGTGCCGACTATCAAATAAATTCAAGAGATTTATTTGATAGTCGGCACTTTTTG-3′
        3′-GCACGGCTGATAGTTTATTTAAGTTCTCTAAATAAACTATCAGCCGTGAAAAACTTAA-p-5′
RIG I
(1,103–1,122)
5′-p-GATCCAGACATGGGTATAGAGTTATTCAAGAGATAACTCTATACCCATGTCTTTTTTG-3′
        3′-GTCTGTACCCATATCTCAATAAGTTCTCTATTGAGATATGGGTACAGAAAAAACTTAA-p-5′
NOD2
(926–944)
5′-p-GATCCCAAATGCCACCAGGAACTGTTCAAGAGACAGTTCCTGGTGGCATTTGTTTTTG-3′
        3′-GGTTTACGGTGGTCCTTGACAAGTTCTCTGTCAAGGACCACCGTAAACAAAAACTTAA-p-5′
IRF3
(600–618)
5′-p-CCGGGATCTGATTACCTTCACGGAACTCGAGTTCCGTGAAGGTAATCAGATCTTTTTG-3′
        3′-CTAGACTAATGGAAGTGCCTTGAGCTCAAGGCACTTCCATTAGTCTAGAAAAACTTAA-p-5′
IRF7
(1,298–1,317)
5′-p-GATCCGCACGTTCCTATACGGCCCTTCAAGAGAGGGCCGTATAGGAACGTGCTTTTTG-3′
        3′-GCGTGCAAGGATATGCCGGGAAGTTCTCTCCCGGCATATCCTTGCACGAAAAACTTAA-p-5′