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. 2019 Dec 27;20(Suppl 23):646. doi: 10.1186/s12859-019-3279-2

Table 1.

The list of the tuned hyperparameters

Hyperparameter Prob/pair/mixed matrix One-hot matrix
Number of convolution layers 2, 4, 6 1
Kernel size for convolution 2, 3, 5 [8, 16], [4, 8, 12, 16], [2, 4, 6, 8, 10, 12, 14, 16]
[2, 4, 6, 8, 10, 12, 14, 16]
[2, 4, 6, 8, 10, 12, 14, 16]
Number of kernels (1st convolution layer) 16, 32, 64 64, 128, 256, 512
Number of kernels (2nd convolution layer) 32, 64, 128 not applicable
Pooling method Max pooling, average pooling
Number of units (1st fully connected layer) 64, 128,256 128, 256, 512
Number of units (2nd fully connected layer) 32, 64, 128 not applicable
Learning algorithm Adam, SGD
Dropout rate 0.7, 0.5