Table 3.

Prediction accuracy(%) and F-score(%) of CNNs trained on families of different sizes

Method	Rfam-300		Rfam-120		Rfam-60		Rfam-30
	Acc.1	F-score	Acc.	F-score	Acc.	F-score	Acc.	F-score
Pair matrix	89.91	89.99	77.71	76.87	71.27	68.82	60.60	56.32
Prob matrix	83.69	83.28	72.86	71.61	69.83	67.66	59.37	54.72
Mixed matrix	87.78	87.32	74.94	73.67	66.15	63.67	53.31	48.71
One-hot matrix	99.25	99.25	98.87	98.88	98.48	98.45	97.76	97.71

¹Acc. refers to accuracy (%)