Table 1.
Frequency of annotation IDs that are significantly enriched in core components of pathogenic lifestyles within selected functional categories (see section “Calculation of enrichment and significance of core pathogenic functions”, Methods). Number in parentheses indicates percentage of annotations in a lifestyle, e.g., there are 10 annotations related to nucleic acids in B which represent 29.4% of the annotations of B. Numbers in bold represent abundant fuctional categories. Detailed annotations are illustrated in Additional file 2: Table S3
| Functional category/Core a | B (%) b | H (%) | N (%) | HN (%) | BH (%) | NB (%) | BHN (%) |
|---|---|---|---|---|---|---|---|
| Amino acid metabolism | 2 (5.9) | 12 (15.0) | 1 (6.3) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| Carbohydrate metabolism | 2 (5.9) | 22 (27.5) | 1 (6.3) | 11 (36.7) | 1 (14.3) | 0 (0.0) | 0 (0.0) |
| Nucleic acid related | 10 (29.4) | 4 (5.0) | 0 (0.0) | 2 (6.7) | 4 (57.1) | 1 (33.3) | 0 (0.0) |
| Protease | 3 (8.8) | 5 (6.3) | 3 (18.8) | 5 (16.7) | 0 (0.0) | 1 (33.3) | 4 (80.0) |
| Secondary metabolites | 3 (8.8) | 19 (23.8) | 2 (12.5) | 7 (23.3) | 0 (0.0) | 0 (0.0) | 1 (20.0) |
| Signal transduction | 6 (17.7) | 3 (3.8) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| Transporters | 6 (17.7) | 16 (20.0) | 7 (43.8) | 6 (20.0) | 2 (28.6) | 0 (0.0) | 0 (0.0) |
| Chaperone | 0 (0.0) | 1 (1.3) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| CO2 sensing | 0 (0.0) | 1 (1.3) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| Energy | 1 (2.9) | 1 (1.3) | 0 (0.0) | 1 (3.3) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| Light sensing and light-responsive nucleic acid functions | 1 (2.9) | 1 (1.3) | 0 (0.0) | 0 (0.0) | 4 (57.1) | 0 (0.0) | 0 (0.0) |
| Oxidoreductases | 0 (0.0) | 2 (2.5) | 1 (6.3) | 1 (3.3) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| Symbiosis | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 1 (33.3) | 0 (0.0) |
| Trafficking | 3 (8.8) | 7 (8.8) | 0 (0.0) | 1 (3.3) | 0 (0.0) | 1 (33.3) | 0 (0.0) |
| Translation | 3 (8.8) | 1 (1.3) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| Unknown | 1 (2.9) | 4 (5.0) | 2 (12.5) | 0 (0.0) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| Vitamin | 0 (0.0) | 2 (2.5) | 0 (0.0) | 1 (3.3) | 0 (0.0) | 0 (0.0) | 0 (0.0) |
| Total annotation ID countc | 34 | 80 | 16 | 30 | 7 | 3 | 5 |
a B biotroph, H hemibiotroph, N necrotroph, HN hemibiotroph and necrotroph, BH biotroph and hemibiotroph, NB necrotroph and biotroph, BHN biotroph, hemibiotroph, and necrotroph
b Counts of annotations (e.g., KEGG ortholog ID) associated with a function
c One annotation ID is counted only once even if it occurs in multiple functions