Table 3.

Raw RNA read pair counts for pooled samples

Pooled samplea	Number of clean raw read pairs	% mapping of readsb
R0_1	16,767,072	48.09
R0_2	22,925,459	21
R0_3	17,896,912	41.2
S0_1	18,800,570	35.94
S0_2	18,024,164	38.28
S0_3	18,505,908	42.97
R4_1	17,370,478	39.81
R4_2	19,861,892	41.95
R4_3	22,849,237	40.87
S4_1	15,788,290	36.16
S4_2	25,499,790	38.22
S4_3	19,324,230	39.91

^a R resistant, S susceptible, 0 – day 0 pre infection, 4- day 4 post infection

^b % mapping of reads to carp transcriptome from [30]