Skip to main content
. Author manuscript; available in PMC: 2020 Dec 19.
Published in final edited form as: Mol Cell. 2019 Oct 24;76(6):938–952.e5. doi: 10.1016/j.molcel.2019.09.025

KEY RESOURCE TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, Peptides, and Recombinant Proteins
HEPES Sigma-Aldrich H3375-250G
Sodium citrate tribasic dihydrate Sigma-Aldrich C8532-1KG
Citric acid Sigma-Aldrich C0759-500G
Sodium acetate Sigma-Aldrich S7545-1KG
Magnesium chloride hexahydrate Sigma-Aldrich M2393-500G
Potassium sulfate Sigma-Aldrich P9458-250G
Lithium chloride Sigma-Aldrich L9650-500G
glycerol Sigma-Aldrich G5516-1L
DL-Dithiothreitol (DTT) Sigma-Aldrich D9163-25G
Pentaerythritol propoxylate (5/4 PO/OH) Sigma-Aldrich 41-8749-500ML
PEG 600 Sigma-Aldrich 202401-500G
PEG 3,350 Sigma-Aldrich 88276-1KG-F
PEG 6,000 Sigma-Aldrich 81255-1KG
T7 RNA polymerase Home-made N/A
Ulp1 Home-made N/A
Toluidine Blue AMRESCO 0672-25G
Urea AMRESCO 0378-5KG
Spermidine Sigma-Aldrich S2626-1G
ATP Sigma-Aldrich A2383
UTP Sigma-Aldrich U6625
CTP Sigma-Aldrich C1506
GTP Sigma-Aldrich G8877
AxyPrep Plasmid Maxiprep Kit 25-prep Axygen AP-MX-P-25G
Critical Commercial Assays
Chelating Sepharose Fast Flow GE Healthcare Cat# 17-0575-02
HiTrap Heparin HP GE Healthcare Cat# 17-0407-03
HiTrap SP HP GE Healthcare Cat# 17-1152-01
Superdex 200 Increase, 10/300 GL GE Healthcare Cat# 28-9909-44
Deposited Data
The coordinates of Nme1Cas9-sgRNA complex This paper PDB: 6JDQ
The coordinates of Nme1Cas9 (His588Ala)-sgRNA-DNA in catalytic state This paper PDB: 6JDV
The coordinates of Nme1Cas9-sgRNA-DNA in seed-base paring state This paper PDB: 6KC7
The coordinates of Nme1Cas9(WT)-sgRNA-DNA in post-cleavage state This paper PDB: 6KC8
The coordinates of Nme2Cas9-sgRNA-dsDNA-0nt complex This paper PDB: 6JFU
The coordinates of Nme2Cas9-sgRNA-dsDNA-5nt complex This paper PDB: 6JE3
The coordinates of Nme1Cas9-sgRNA-AcrIIC3 complex This paper PDB: 6JE9
The coordinates of Nme1Cas9-sgRNA-AcrIIC3-dsDNA complex This paper PDB: 6JE4
The coordinates of SpyCas9-sgRNA-DNA complex Anders et al., 2014. PDB: 4UN3
The coordinates of SauCas9-sgRNA-DNA complex Nishimasu et al., 2015. PDB: 5CZZ
The coordinates of SpyCas9-sgRNA-DNA complex Jiang et al., 2016. PDB: 5F9R
Experimental Models: Organisms/Strains
Escherichia coli Rosetta (DE3) Novagen Cat# 70954-3
Recombinant DNA
pET28a-Nme1Cas9, various mutants This paper N/A
pET28a-Nme2Cas9, various mutants This paper N/A
pET28a-AcrIIC3 This paper N/A
pET30b-Nme1Cas9 This paper N/A
Oligonucleotides
147-nt SgRNA sequence. GGUCACUCUGCU
AUUUAACUUUACGUUGUAGCUCCCUUUC
UCAUUUCGGAAACGAAAUGAGAACCGUUG
CUACAAUAAGGCCGUCUGAAAAGAUGUGC
CGCAACGCUCUGCCCCUUAAAGCUCCUGC
UUUAAGGGGCAUCGUUUAUC
This paper N/A
135-nt SgRNA sequence. GGUCACUCUGCUAU
UUAACUUUACGUUGUAGCUCCCUUUCUCG
AAAGAGAACCGUUGCUACAAUAAGGCCGUC
UGAAAAGAUGUGCCGCAACGCUCUGCCCC
UUAAAGCUCCUGCUUUAAGGGGCAUCGU
UUAUC
This paper N/A
122-nt SgRNA sequence. GGUCACUCUUCUAU
UUACCUAUACGUUGUAGCUCCCUUUCUCAUU
UCGGAAACGAAAUGAGAACCGUUGCUACAAUA
AGGCCGUCUGAAAAGAUGUGCCGCAACGCUC
UUUCUAGAGCGUUC
This paper N/A
102-nt SgRNA sequence. GGACUCACGACGCA
UUACCUUUACGUUGUAGCUCCCUUUCUCAUU
UCGGAAACGAAAUGAGAACCGUUGCUACAAUA
AGGCCGUCUGAAAAGAUGUGCCAUC
This paper N/A
SpyCas9 sgRNA sequence. GGAAAUUAGGUGCGC
UUGGCGUUUUAGAGCUAGAAAUAGCAAGUUAAAA
UAAGGCUAGUCCGUUAUCAACUUGAAAAAG
UGGCACCGAGUCGGUGCUUC
This paper N/A
SauCas9 sgRNA sequence. GGUCUGCUAUUUCUA
UUUACGUUUUAGUACUCUGGAAACAGAAUCUAC
UAAAACAAGGCAAAAUGCCGUGUUUAUC
UCGUCAACUUGUUGGCGAGAUC
This paper N/A
DNA sequences This paper Table S4
Plasmids and primers This paper Table S5
Software and Algorithms
PHENIX Adams et al., 2002 http://www.phenix-online.org/
HKL2000 Otwinowski and Minor, 1997 http://www.hkl-xray.com/
COOT Emsley et al., 2010 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
PyMOL Molecular Graphics System, Version 1.8 Schrödinger, LLC https://www.pymol.org/2/
PHASER McCoy et al., 2007 https://www-structmed.cimr.cam.ac.uk/phaser_obsolete/
Other
Amicon Ultra Centrifugal Filters Ultracel-50K Merck Millipore Ltd UFC903096
Amicon Ultra Centrifugal Filters Ultracel-10K Merck Millipore Ltd UFC801096
3 Well Midi Crystallization Plate (Swissci) HAMPTON RESEARCH Cat# HR3-125