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. Author manuscript; available in PMC: 2019 Dec 27.
Published in final edited form as: Cell Rep. 2019 Dec 3;29(10):3019–3032.e6. doi: 10.1016/j.celrep.2019.10.131

Figure 2. Transcriptomic Patterns of TILs, dLN Cells, and Arm Cells.

Figure 2.

TILs, dLN cells, and Arm cells from replicate experiments I and II analyzed by scRNA-seq. Heatmap shows row-standardized expression of selected genes across clusters. Group II (purple) t5 separated into a distinct component from t3–4 (as defined in the text). Of note, high-level expression of T-bet and other genes in Arm cells (included in this dataset), reduces the Z score (row normalized) expression value for such genes in TILs or dLN cells, accounting for their apparent lower relative expression compared with that in Figures 1A and S2B.

See also Figure S2 and Table S2.