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. Author manuscript; available in PMC: 2020 Jan 10.
Published in final edited form as: Cell. 2018 Nov 29;176(1-2):239–253.e16. doi: 10.1016/j.cell.2018.10.052

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, Peptides, and Recombinant Proteins
Urea AMRESCO Cat# 0378–5KG
TRIS AMRESCO Cat# 0497–5KG
Toluidine Blue AMRESCO Cat# 0672–25G
HEPES Sigma-Aldrich Cat# H3375–250G
Sodium citrate tribasic dihydrate Sigma-Aldrich Cat# C8532–1KG
PEG 20,000 Sigma-Aldrich Cat# 81300–1KG
Glycerol Sigma-Aldrich Cat# G5516–1L
T7 RNA polymerase Home-made N/A
Spermindine Sigma-Aldrich Cat# S2626–1G
[α-32P] ATP PerkinElmer Cat# NEG503H250UC
ATP Sigma-Aldrich Cat# A2383
UTP Sigma-Aldrich Cat# U6625
CTP Sigma-Aldrich Cat# C1506
GTP Sigma-Aldrich Cat# G8877
AMPPNP Sigma-Aldrich Cat# A2647–25MG
AxyPrep Plasmid Maxiprep Kit 25-prep Axygen Cat# AP-MX-P-25G
Critical Commercial Assays
Chelating Sepharose Fast Flow GE Healthcare Cat# 17-0575-02
HiTrap Heparin GE Healthcare Cat# 17-1152-01
Superdex 200 Increase, 10/300 GL GE Healthcare Cat# 28-9909-44
Deposited Data
The coordinates of SthCsm binary complex This study PDB: 6IFN
The coordinates of SthCsm-NTR complex This study PDB: 6IFL
The coordinates of SthCsm-CTR1 complex This study PDB: 6IFY
The coordinates of SthCsm-CTR2-bubbled DNA complex This study PDB: 6IFU
The coordinates of SthCsm-CTR2-ssDNA complex This study PDB: 6IFZ
The coordinates of SthCsm-CTR1-AMPPNP complex This study PDB: 6IFK
The coordinates of SthCsm-CTR1-ATP complex This study PDB: 6IG0
The coordinates of SthCsm-NTR-ATP complex This study PDB: 6IFR
The density map of SthCsm-NTR complex This study EMDB: EMD-9654
The density map of SthCsm-CTR1 complex This study EMDB: EMD-9658
The density map of SthCsm-CTR2-bubbled DNA complex This study EMDB: EMD-9657
The density map of SthCsm-CTR2-ssDNA complex This study EMDB: EMD-9659
The density map of SthCsm-CTR1-AMPPNP complex This study EMDB: EMD-9653
The density map of SthCsm-CTR1-ATP complex This study EMDB: EMD-9660
The density map of SthCsm-NTR-ATP complex This study EMDB: EMD-9656
Experimental Models: Organisms/Strains
Escherichia coli BL21 (DE3) Novagen Cat# 69450
Thermus thermophilus HB27 Henne et al., 2004 N/A
Thermus thermophilus HB27 III-A+ This study N/A
Thermus thermophilus HB27 III-A This study N/A
Recombinant DNA
pCDFDuet-Csm1-Csm4, various mutants This study N/A
pRSFDuet-His6-Csm3-Csm2, various mutants This study N/A
pETDuet-Csm5 This study N/A
pACYCDuet-Cas6-pre-crRNA This study N/A
Oligonucleotides
RNA and DNA This study Table S4
Software and Algorithms
PHENIX Adams et al., 2002 http://www.phenix-online.org/
Coot Emsley et al., 2010 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
PyMOL Molecular Graphics System, Version 1.8 Schrodinger https://pymol.org/2/
MotionCor2 Zheng et al., 2017 http://msg.ucsf.edu/em/software/motioncor2.html
CTFFind4 Rohou and Grigorieff, 2015 http://grigoriefflab.janelia.org/ctffind4
RELION2.0 Kimanius et al., 2016 http://www2.mrc-lmb.cam.ac.uk/relion/index.php?title=Main_Page
USCF Chimera Pettersen et al., 2004 https://www.cgl.ucsf.edu/chimera/
ResMap Kucukelbir et al., 2014 http://resmap.sourceforge.net/
ImageJ NIH https://imagej.nih.gov/ij/
GraphPad Prism 7 GraphPad Software https://www.graphpad.com/scientific-software/prism/
Other
Amicon Ultra Centrifugal Filters Ultracel-30K Merck Millipore Ltd Cat# UFC903096
3 Well Midi Crystallization Plate (Swissci) HAMPTON RESEARCH Cat# HR3–125
GiG-C322 grids (2 mm holes and spacing) Beijing Zhongjingkeyi Technology Cat# GIG-2020–300