Chemicals, Peptides, and Recombinant Proteins |
Urea |
AMRESCO |
Cat# 0378–5KG |
TRIS |
AMRESCO |
Cat# 0497–5KG |
Toluidine Blue |
AMRESCO |
Cat# 0672–25G |
HEPES |
Sigma-Aldrich |
Cat# H3375–250G |
Sodium citrate tribasic dihydrate |
Sigma-Aldrich |
Cat# C8532–1KG |
PEG 20,000 |
Sigma-Aldrich |
Cat# 81300–1KG |
Glycerol |
Sigma-Aldrich |
Cat# G5516–1L |
T7 RNA polymerase |
Home-made |
N/A |
Spermindine |
Sigma-Aldrich |
Cat# S2626–1G |
[α-32P] ATP |
PerkinElmer |
Cat# NEG503H250UC |
ATP |
Sigma-Aldrich |
Cat# A2383 |
UTP |
Sigma-Aldrich |
Cat# U6625 |
CTP |
Sigma-Aldrich |
Cat# C1506 |
GTP |
Sigma-Aldrich |
Cat# G8877 |
AMPPNP |
Sigma-Aldrich |
Cat# A2647–25MG |
AxyPrep Plasmid Maxiprep Kit 25-prep |
Axygen |
Cat# AP-MX-P-25G |
Critical Commercial Assays |
Chelating Sepharose Fast Flow |
GE Healthcare |
Cat# 17-0575-02 |
HiTrap Heparin |
GE Healthcare |
Cat# 17-1152-01 |
Superdex 200 Increase, 10/300 GL |
GE Healthcare |
Cat# 28-9909-44 |
Deposited Data |
The coordinates of SthCsm binary complex |
This study |
PDB: 6IFN |
The coordinates of SthCsm-NTR complex |
This study |
PDB: 6IFL |
The coordinates of SthCsm-CTR1 complex |
This study |
PDB: 6IFY |
The coordinates of SthCsm-CTR2-bubbled DNA complex |
This study |
PDB: 6IFU |
The coordinates of SthCsm-CTR2-ssDNA complex |
This study |
PDB: 6IFZ |
The coordinates of SthCsm-CTR1-AMPPNP complex |
This study |
PDB: 6IFK |
The coordinates of SthCsm-CTR1-ATP complex |
This study |
PDB: 6IG0 |
The coordinates of SthCsm-NTR-ATP complex |
This study |
PDB: 6IFR |
The density map of SthCsm-NTR complex |
This study |
EMDB: EMD-9654 |
The density map of SthCsm-CTR1 complex |
This study |
EMDB: EMD-9658 |
The density map of SthCsm-CTR2-bubbled DNA complex |
This study |
EMDB: EMD-9657 |
The density map of SthCsm-CTR2-ssDNA complex |
This study |
EMDB: EMD-9659 |
The density map of SthCsm-CTR1-AMPPNP complex |
This study |
EMDB: EMD-9653 |
The density map of SthCsm-CTR1-ATP complex |
This study |
EMDB: EMD-9660 |
The density map of SthCsm-NTR-ATP complex |
This study |
EMDB: EMD-9656 |
Experimental Models: Organisms/Strains |
Escherichia coli BL21 (DE3) |
Novagen |
Cat# 69450 |
Thermus thermophilus HB27 |
Henne et al., 2004 |
N/A |
Thermus thermophilus HB27 III-A+
|
This study |
N/A |
Thermus thermophilus HB27 III-A−
|
This study |
N/A |
Recombinant DNA |
pCDFDuet-Csm1-Csm4, various mutants |
This study |
N/A |
pRSFDuet-His6-Csm3-Csm2, various mutants |
This study |
N/A |
pETDuet-Csm5 |
This study |
N/A |
pACYCDuet-Cas6-pre-crRNA |
This study |
N/A |
Oligonucleotides |
RNA and DNA |
This study |
Table S4 |
Software and Algorithms |
PHENIX |
Adams et al., 2002 |
http://www.phenix-online.org/ |
Coot |
Emsley et al., 2010 |
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
PyMOL |
Molecular Graphics System, Version 1.8 Schrodinger |
https://pymol.org/2/ |
MotionCor2 |
Zheng et al., 2017 |
http://msg.ucsf.edu/em/software/motioncor2.html |
CTFFind4 |
Rohou and Grigorieff, 2015 |
http://grigoriefflab.janelia.org/ctffind4 |
RELION2.0 |
Kimanius et al., 2016 |
http://www2.mrc-lmb.cam.ac.uk/relion/index.php?title=Main_Page |
USCF Chimera |
Pettersen et al., 2004 |
https://www.cgl.ucsf.edu/chimera/ |
ResMap |
Kucukelbir et al., 2014 |
http://resmap.sourceforge.net/ |
ImageJ |
NIH |
https://imagej.nih.gov/ij/ |
GraphPad Prism 7 |
GraphPad Software |
https://www.graphpad.com/scientific-software/prism/ |
Other |
Amicon Ultra Centrifugal Filters Ultracel-30K |
Merck Millipore Ltd |
Cat# UFC903096 |
3 Well Midi Crystallization Plate (Swissci) |
HAMPTON RESEARCH |
Cat# HR3–125 |
GiG-C322 grids (2 mm holes and spacing) |
Beijing Zhongjingkeyi Technology |
Cat# GIG-2020–300 |