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. 2019 Dec 29;10:52. doi: 10.1186/s13100-019-0192-1

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Comparison of mapper efficiency with mouse simulated data. a A diagram showing the method for the data simulation. The circles represent used tools and the rectangles correspond to files. b True Positive (TP) rate versus mapping percentage with chromosome 1 of the mouse genome. The dots are the average values of three independent simulated libraries. SE and PE refer to single end and paired end, respectively. c Use memory, run time and size of the BAM file with chromosome 1 of the mouse genome. The error bars correspond to standard deviation from three independent simulated libraries