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. 2019 Dec 29;10:52. doi: 10.1186/s13100-019-0192-1

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Mappability of the different mouse retrotransposon families. a True Positive (TP) rate versus mapping percentage per TE family using STAR and paired-end library with mouse simulated TE-derived reads. Black triangle represents the True Positive rate and percentage of mapping for the entire simulated library. b Mapping percentage versus age of L1Md families. Dot colors represent the True Positive (TP) rate. Ages are obtained from previously published divergence analysis study [24] c Gain of True Positive in percentage versus gain of mapping in percentage when PE library are used in comparison to SE library