TABLE 2.
Occurrence of nucleotide changes in isolates P2 to P5 compared to P1
| Contig or total | No. of changes by isolate for: |
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|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Nonsynonymous SNPs (n = 18) |
Intergenic SNPs/indels (n = 166) |
ORF indels/frameshifts (n = 14) |
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| P2 | P3 | P4 | P5 | P2 | P3 | P4 | P5 | P2 | P3 | P4 | P5 | |
| Chr 1 | 1 | 2 | 2 | 1 | 9 | 6 | 6 | 6 | 1 | 0 | 1 | 1 |
| Chr 2 | 2 | 0 | 1 | 2 | 9 | 5 | 6 | 3 | 0 | 1 | 2 | 1 |
| Chr 3 | 0 | 3 | 0 | 0 | 10 | 5 | 5 | 6 | 0 | 1 | 0 | 0 |
| Chr 4 | 0 | 0 | 0 | 0 | 15 | 11 | 8 | 9 | 0 | 1 | 2 | 0 |
| Chr 5 | 0 | 1 | 0 | 0 | 5 | 4 | 4 | 3 | 0 | 1 | 0 | 0 |
| Chr 6 | 0 | 0 | 0 | 3 | 2 | 2 | 2 | 1 | 0 | 0 | 1 | 1 |
| Chr 7 | 0 | 0 | 0 | 0 | 3 | 3 | 2 | 2 | 0 | 0 | 0 | 0 |
| Chr 8 | 0 | 0 | 0 | 0 | 6 | 4 | 2 | 2 | 0 | 0 | 0 | 0 |
| Total | 3 | 6 | 3 | 6 | 59 | 40 | 35 | 32 | 1 | 4 | 6 | 3 |