Antibodies |
anti-GFAP rabbit mAb |
Roche |
Cat#05269784001 |
Texas Red conjugated goat anti-rabbit IgG |
Thermo Fisher Scientific |
Cat# T-2767; RRID:AB_2556776 |
FITC anti-CD11b |
eBioscience |
Cat#11–0112–85; RRID: AB_464936 |
APC anti-CD45 |
eBioscience |
Cat#17–0451–83; RRID:AB_469393 |
PerCP anti-Ly-6C |
Biolegend |
Cat#128028; RRID:AB_10897805 |
PE anti-mouse CD45R/B220 |
BD Biosciences |
Cat#553089; RRID:AB_394619 |
PE anti-mouse TER-119 |
Biolegend |
Cat#116207; RRID:AB_313708 |
PE anti-O4 |
R&D systems |
Cat#FAB1326P; RRID:AB_664169 |
PE anti-CD105 |
eBioscience |
Cat#12–1051–82; RRID:AB_657524 |
PE anti-CD140a |
eBioscience |
Cat#12–1401–81; RRID:AB_657615 |
PE anti-Ly-6G |
Biolegend |
Cat#127608; RRID:AB_2129141 |
BV421 anti-CD3, |
BioLegend |
Cat#100227; RRID:AB_10900227 |
BV605 anti-CD4 |
BioLegend |
Cat#100547; RRID:AB_11125962 |
FITC anti-IFNγ |
BioLegend |
Cat#505806; RRID:AB_315400 |
PE anti-IL-17a |
eBioscience |
Cat#12–7177–81; RRID:AB_763582 |
APC anti-IL-10 |
BioLegend |
Cat#505010; RRID:AB_315364 |
PerCP-Cy5.5 anti-FoxP3 |
eBioscience |
Cat#45–5773–82; RRID:AB_914351 |
CD11b Microbead for mouse and human |
Miltenyi |
Cat#130–049–601 |
anti-Histone H3 rabbit polyclonal antibody |
Sigma-Aldrich |
Cat#07–690; RRID:AB_417398 |
anti-Lamin B1 rabbit mAb (HRP Conjugate) |
Cell Signaling Technology |
Cat#15068S; RRID:AB_2798695 |
anti-NF-κB p65 rabbit mAb |
Cell Signaling Technology |
Cat#8242S; RRID:AB_10859369 |
anti-Bsg rabbit mAb |
Thermo Fisher Scientific |
Cat#MA5–32534; RRID:AB_2809811 |
anti-Hk2 rabbit mAb |
Cell signaling Technology |
Cat#2867; RRID:AB_2232946 |
anti-p65 rabbit mAb |
Cell Signaling Technology |
Cat#8242; RRID:AB_10859369 |
control IgG isotype antibody |
Cell Signaling Technology |
Cat#3900S; RRID:AB_1550038 |
anti-MAVS rabbit mAb |
Cell Signaling Technology |
Cat#4983; RRID:AB_823566 |
anti-MAVS rabbit mAb |
Cell Signaling Technology |
Cat#24930S; RRID:AB_2798889 |
anti-MAVS mouse mAb |
Santa Cruz Biotechnology |
Cat#sc-365333; RRID:AB_10844335 |
anti-MAVS rabbit polyclonal Ab |
abcam |
Cat#ab189109 |
anti-cPLA2 (4–4B-3C) mouse mAb |
Santa Cruze Biotechnology |
Cat#sc-454; RRID:AB_627288 |
anti-cPLA2 rabbit mAb |
Cell Signaling Technology |
Cat#2832; RRID:AB_2164442 |
anti-HK2 rabbit mAb |
abcam |
Cat#ab228819 |
anti-HK2 rabbit mAb |
Cell Signaling Technology |
Cat#2867; RRID:AB_2232946 |
anti-HK2 (B8) mouse mAb |
Santa Cruz Biotechnology |
Cat#sc-374091; RRID:AB_10917915 |
anti-flag mouse mAb |
Sigma-Aldrich |
Cat#F1804; RRID:AB_262044 |
anti-flag rabbit polyclonal Ab |
Sigma-Aldrich |
Cat#F7425; RRID:AB_439687 |
anti-GFP rabbit polyclonal Ab |
abcam |
Cat#ab290; RRID:AB_303395 |
anti-rabbit IgG HRP-linked Ab |
Cell Signaling Technology |
Cat#7074S; RRID:AB_2099233 |
anti-mouse IgG HRP-linked Ab |
Cell Signaling Technology |
Cat#7076S; RRID:AB_330924 |
goat anti-rabbit IgG poly-HRP |
Invitrogen |
Cat#32260; RRID:AB_1965959 |
goat anti-mouse IgG poly-HRP |
Invitrogen |
Cat#32230; RRID:AB_1965958 |
anti-Tom20 rabbit polyclonal Ab |
Santa Cruz Biotechnology |
Cat#sc-11415; RRID:AB_2207533 |
AF635 conjugated anti-mouse IgG goat Ab |
Life Technologies |
Cat#A31574; RRID:AB_1500640 |
biotinylated anti-rabbit immunoglobulins goat Ab |
Agilent/Dako |
Cat#E0432; RRID:AB_2313609 |
Cy3 conjugated mouse anti-human GFAP |
Sigma-Aldrich |
Cat#C9205; RRID:AB_476889 |
anti-GFAP mouse mAb |
Millipore |
Cat#MAB360; RRID:AB_11212597 |
anti-COX4-I1 goat polyclonal Ab |
R&D Systems |
Cat#AF5814; RRID:AB_2085286 |
anti-NF-κB p65 (acetyl-Lys310) rabbit polyclonal Ab |
Sigma-Aldrich |
Cat#SAB4502616; RRID:AB_10745506 |
anti-mouse c3d goat polyclonal antibody |
R&D Systems |
Cat#AF2655; RRID:AB_2066622 |
AF488 conjugated anti-rabbit IgG goat Ab |
Thermo Fisher Scientific |
Cat#A11008; RRID:AB_143165 |
AF488 conjugated anti-goat IgG donkey antibody |
Thermo Fisher Scientific |
Cat#A11055; RRID:AB_2534102 |
AF647 anti-rabbit IgG donkey fab fragment |
Jackson Immunoresearch |
Cat#711–607–003; RRID:AB_2340626 |
AF647 conjugated anti-mouse IgG donkey Ab |
abcam |
Cat#ab150107 |
Rhodamine anti-mouse IgG donkey fab fragment |
Jackson Immunoresearch |
Cat#715–297–003; RRID:AB_2340836 |
AF405 conjugated anti-mouse IgG goat antibody |
Thermo Fisher Scientific |
Cat#A31553; RRID:AB_221604 |
AF405 conjugated anti-rabbit IgG goat antibody |
Thermo Fisher Scientific |
Cat#A31556; RRID:AB_221605 |
Bacterial and Virus Strains |
Non-viable desiccated M.Tuberculosis H-37Ra |
BD Bioscience |
Cat#231141 |
NEB Stable E. Coli |
New England Biolabs |
Cat#C3040 |
NEB 10-beta Competent E. coli |
New England Biolabs |
Cat#C3019 |
Biological Samples |
Human fetal astrocytes |
Laboratory of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development |
N/A |
Human pathology samples |
University of Montreal Health Centre |
N/A |
Paraffin-embedded brain sections |
Neuropathology Department of the Notre Dame Hospital |
N/A |
Chemicals, Peptides, and Recombinant Proteins |
MOG35–55 peptide |
Genemed Synthesis |
Cat#110582 |
Incomplete Freund’s adjuvant |
BD Bioscience |
Cat#263910 |
Miglustat hydrochloride |
MedChemExpress |
Cat#HY-17020A |
Miglustat |
BOC Sciences |
Cat#72599–27–0 |
Pertussis toxin |
List biological Laboratories |
Cat#180 |
Papain |
Sigma-Aldrich |
Cat#P4762 |
Collagenase D |
Roche |
Cat#11088858001 |
DNase I |
Thermo Fisher Scientific |
Cat#90083 |
DNase I |
QIAGEN |
Cat#79254 |
Percoll |
GE Healthcare |
Cat#17–5445–01 |
UltraComp eBeads™ Compensation Beads |
Invitrogen |
Cat#01–2222–41 |
PMA (phorbol 12-myristate 13-acetate) |
Sigma-Aldrich |
Cat#P1585 |
Ionomycin |
Sigma-Aldrich |
Cat#I9657 |
GolgiSTOP |
BD Biosciences |
Cat#554724 |
Taqman Fast Universal PCR Master Mix |
Life Technologies |
Cat#4367846 |
Fast SYBR Green Master Mix |
Thermo Fisher Scientific |
Cat#4385612 |
Poly-L-Lysine |
Sigma-Aldrich |
Cat#P4707 |
Polybrene |
Sigma-Aldrich |
Cat#TR-1003-G |
INTERFERin |
Polyplus transfection |
Cat#409 |
Mouse TNFα recombinant protein |
R&D systems |
Cat#410-MT-010 |
Human TNFα recombinant protein |
R&D systems |
Cat#210-TA-020 |
Mouse IFNγ recombinant protein |
R&D systems |
Cat#485-MI-100 |
Human IFNγ recombinant protein |
R&D systems |
Cat#285-IF-100 |
Accutase solution |
Sigma-Aldrich |
Cat#A6964 |
Pyrrophenone |
Santa Cruz Biotechnology |
Cat#sc-296161 |
N-acetyl cysteine |
Sigma-Aldrich |
Cat#A7250 |
HBEGF |
Sigma-Aldrich |
Cat#E4643 |
Rat II-1α recombinant protein |
Sigma-Aldrich |
Cat#I3901 |
Human TNFα recombinant protein |
Cell Signaling Technology |
Cat#8902SF |
Human Complement Component C1q, Native Protein |
MyBioSource |
Cat#MBS143105 |
transferrin |
Sigma-Aldrich |
Cat#T-1147 |
BSA |
Sigma-Aldrich |
Cat#A8806 |
putrescine |
Sigma-Aldrich |
Cat#P5780 |
progesterone |
Sigma-Aldrich |
Cat#P8783 |
sodium selenite |
Sigma-Aldrich |
Cat#S5261 |
Formaldehyde solution, molecular grade |
Sigma-Aldrich |
Cat#F8775 |
Halt Protease and Phosphatase Inhibitor Cocktail |
Thermo Fisher Scientific |
Cat#78441 |
SuperSignal West Femto Maximum Sensitivity Substrate |
Thermo Fisher Scientific |
Cat#34095 |
KwikQuant Ultra Digital-ECL Substrate Solution |
Kindle Biosciences |
Cat#R1002 |
Protein A-Dynabeads magnetic beads |
Thermo Fisher Scientific |
Cat#10001D |
Protein G-Dynabeads magnetic beads |
Thermo Fisher Scientific |
Cat#10003D |
SeaKem GOLD agarose |
Lonza |
Cat#50152 |
Laminin |
Sigma-Aldrich |
Cat#L2020 |
MitoTracker™ Red CMXRos |
Thermo Fisher Scientific |
Cat#M7512 |
donkey serum |
Sigma-Aldrich |
Cat#D9663 |
goat serum |
Sigma-Aldrich |
Cat#G9023 |
mouse serum |
Sigma-Aldrich |
Cat#M5905 |
DAPI Fluoromount-G |
SouthernBiotech |
Cat#0100–20 |
NuPAGE LDS sample buffer |
Invitrogen |
Cat#NP0007 |
Hot Start Taq 2X Master Mix |
New England Biolabs |
Cat#M0496 |
FuGENE HD Transfection Reagent |
Promega |
Cat#E2311 |
UK-5099 |
Tocris Bioscience |
Cat#4186 |
methylglyoxal solution |
Sigma-Aldrich |
Cat#M0252 |
Tyramide-AF488 |
Invitrogen |
Cat#B40953
|
DAPI |
Sigma-Aldrich |
Cat#1.24653 |
Mowiol |
Sigma-Aldrich |
Cat#81381 |
OCT |
Sakura |
Cat#4583 |
2-DG |
Sigma-Aldrich |
Cat#D6134 |
Critical Commercial Assays |
Intracellular antibody labeling kit |
eBioscience |
Cat#00–5523 |
Aqua LIVE/DEAD cell stain kit |
Thermo Fisher Scientific |
Cat#L34966
|
RNeasy Mini Kit |
QIAGEN |
Cat#74106 |
custom-made astrocyte-targeted nCounter Gene Expression code set |
NanoString; (Rothhammer et al., 2017) |
N/A |
High-Capacity cDNA Reverse Transcription Kit |
Life Technologies |
Cat#4368813 |
ViraPower Packaging mix |
Thermo Fisher Scientific |
Cat#K497500 |
Lenti-X concentrator kit |
Clontech |
Cat#631231 |
CytoTox 96 Nonradioactive Cytotoxicity Assay kit |
Promega |
Cat#G1780 |
Cell Fractionation kit |
Cell Signaling Technology |
Cat#9038S |
NucleoSpin® Gel and PCR Clean-up kit |
Macherey-Nagel |
Cat#740609.250 |
Mitochondria Isolation Kit |
abcam |
Cat#ab110170 |
Q5® Site-Directed Mutagenesis Kit |
New England Biolabs |
Cat#E0554S |
Dual-Luciferase® Reporter Assay System |
Promega |
Cat#E1910 |
cellular reactive oxygen species detection assay kit |
abcam |
Cat#ab113851 |
CyQUANT cell proliferation assay kit |
Invitrogen |
Cat#C7026 |
L-lactate assay kit |
Biomedical Research Service & Clinical Application |
Cat#A-108 |
Pierce BCA Protein Assay Kit |
Thermo Fisher Scientific |
Cat#23225 |
Hexokinase Colorimetric Assay Kit |
BioVision |
Cat#K789 |
EnzyChrom Pyruvate Assay Kit |
BioAssay Systems |
Cat#EPYR-100 |
Seahorse XF Cell Mito Stress Test Kit |
Agilent Technologies |
Cat#103015–100 |
avidin-biotin blocking kit |
Thermo Fisher Scientific |
Cat#004303 |
Deposited Data |
RNA-seq |
This paper |
GEO:GSE139531
|
Experimental Models: Cell Lines |
Human: HEK-293FT |
Invitrogen |
Cat#R70007
|
Human: HEK-293 |
ATCC |
Cat#CRL-1573 |
Mouse: N2A neuronal cells |
ATCC |
Cat#CCL-131 |
Experimental Models: Organisms/Strains |
Mouse: C57BL/6J |
The Jackson Laboratory |
JAX: 000664 |
Mouse: NOD/ShiLtJ |
The Jackson Laboratory |
JAX: 001976 |
Mouse: B6;129-Mavstm1Zjc/J |
The Jackson Laboratory |
JAX: 008634 |
Oligonucleotides |
See Table S1
|
This paper |
N/A |
Recombinant DNA |
pLenti-Gfap-GFP-shB4galt6
|
This paper |
N/A |
pLenti-Gfap-GFP-shUgcg
|
This paper |
N/A |
pLenti-Gfap-GFP-shCers1
|
This paper |
N/A |
pLenti-Gfap-GFP-shCers2
|
This paper |
N/A |
pLenti-Gfap-GFP-shCers4
|
This paper |
N/A |
pLenti-Gfap-GFP-shCers5
|
This paper |
N/A |
pLenti-Gfap-GFP-shCers6
|
This paper |
N/A |
pLenti-Gfap-GFP-shPla2g4a
|
This paper |
N/A |
pLenti-Gfap-GFP-shMavs
|
This paper |
N/A |
pLenti-Gfap-GFP-shBsg
|
This paper |
N/A |
pCMV3-C-His-PLA2G4A |
Sino Biological |
Cat#MG51714-CH |
pCMV3-C-His-PLA2G4A (S111P) |
This paper |
N/A |
pCMV3-C-His-PLA2G4A (I399A/L400A/L552A) |
This paper |
N/A |
pCMV3-C-His-PLA2G4A (R485H) |
This paper |
N/A |
pCMV3-C-His-PLA2G4A (D549A) |
This paper |
N/A |
pCMV3-C-His-PLA2G4A (S505A) |
This paper |
N/A |
pCMV3-C-His-PLA2G4A (S505E) |
This paper |
N/A |
pCMV3-C-His-PLA2G4A (dC2) |
This paper |
N/A |
pCMV3-C-His-PLA2G4A (dPL) |
This paper |
N/A |
pEGFP-PLA2G4A |
(Casas et al., 2006) |
N/A |
pEGFP-PLA2G4A (D43N) |
(Casas et al., 2006) |
N/A |
pEGFP-N1-C2 |
(Movahedi Naini et al., 2015) |
N/A |
pMP31–1 (flag-MAVS) |
(Patel et al., 2012) |
Addgene, Cat#45905; RRID:Addgene_45905 |
pMP31–1 (flag-MAVS, G67A/W68A/V69A) |
This paper |
N/A |
pMP31–1 (flag-MAVS, W56A) |
This paper |
N/A |
pcDNA3-flag-MAVS (M2–6L) |
(Qi et al., 2017) |
N/A |
pcDNA3-flag-MAVS (M2) |
(Qi et al., 2017) |
N/A |
pGL4.32(luc2P/NF-kB-RE/Hygro) |
Promega |
Cat#E8491 |
pRL Renilla luciferase |
Promega |
Cat#E2241 |
Software and Algorithms |
R v3.3.3 |
The R Foundation |
https://www.r-project.org/ |
DESeq2 |
(Love et al., 2014); RRID:SCR_015687 |
https://bioconductor.org/packages/release/bioc/html/DESeq2.html |
GENE-E |
Broad Institute |
https://software.broadinstitute.org/GENE-E/ |
Ingenuity pathway analysis |
QIAGEN; RRID:SCR_008653 |
http://www.ingenuity.com/products/pathways_analysis.html |
Fiji |
(Schindelin et al., 2012); RRID:SCR_002285 |
http://fiji.sc |
Ensembl |
(Yates et al., 2016); RRID:SCR_002344 |
http://www.ensembl.org/ |
JASPAR |
(Sandelin et al., 2004); RRID:SCR_003030 |
http://jaspar.genereg.net |
NEBaseChanger |
New England Biolabs |
http://nebasechanger.neb.com/ |
Primer3 |
(Untergasser et al., 2012); RRID:SCR_003139 |
http://bioinfo.ut.ee/primer3-0.4.0/ |
Primer-Blast |
(Ye et al., 2012); RRID:SCR_003095 |
https://www.ncbi.nlm.nih.gov/tools/primer-blast/ |
TraceFinder 3.1 software |
Thermo Fisher Scientific |
N/A |
Prism 8 software |
GraphPad |
N/A |
Other |