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| Probe | Sequence (5’ → 3’) | Target | Reference |
|---|---|---|---|
| Eub338 | GCT GCC TCC CGT AGG AGT | Total bacteria | Amann (1990) |
| Bif164 | CAT CCG GCA TTA CCA CCC | Bifidobacterium spp. | Harmsen (2000) |
| Ebac1790 | CGT GTT TGC ACA GTG CTG | Enterobacteriaceae | Poulsen (1994) |
| Faecali698 | GTG CCC AGT AGG CCG CCT TC | Faecalibacterium spp. | Garcia-Mazcorro (2012) |
| Lab158 | GGT ATT AGC ATC TGT TTC CA | Lactobacillus spp. | Harmsen (2000) |
| Strc493 | GTT AGC CGT CCC TTT CTG G | Streptococcus spp. | Franks (1998) |
