Table 7.
Relative expression level of genes related to internode growth and lodging resistance in YJRZ under the two nitrogen management practices.
| Gene ID | Log2(fold change) | Annotation |
|---|---|---|
| ADP -glucose pyrophosphorylase | ||
| Os09g0298200 | 1.38 | ADP-glucose pyrophosphorylase small subunit 1 |
| Os05g0580000 | 1.462 | ADP-glucose pyrophosphorylase large subunit 3 |
| Os01g0633100 | 1.162 | ADP-glucose pyrophosphorylase small subunit 2 |
| Lignin synthesis related genes | ||
| Os08g0157500 | 1.17 | Caffeic acid 3-O-methyltransferase |
| Os07g0412100 | 1.10 | Granule-bound starch synthase Ib |
| Os04g0518100 | 1.79 | Phenylalanine ammonia-lyase |
| Os02g0627100 | 1.21 | Phenylalanine ammonia-lyase |
| Os09g0419200 | 1.32 | Phenylalanine ammonia-lyase |
| Starch synthesis related genes | ||
| Os06g0160700 | 1.12 | Starch synthase I |
| Os06g0133000 | 1.20 | Starch synthase I |
| Os02g0744700 | 1.10 | Starch synthase isoform |
| Expansin | ||
| Os04g0228400 | −2.44 | Alpha-expansin OsEXPA |
| Os10g0556100 | −1.94 | Beta-expansin EXPB4 |
| Os05g0477600 | −1.81 | Alpha-expansin OsEXPA4 |
| Os02g0744200 | −1.50 | Alpha-expansin OsEXPA5 |
| Os03g0336400 | −1.42 | Alpha-expansin OsEXPA4 |
| Os07g0475400 | −1.04 | Expansin-like protein A |
| Glycosyl hydrolase | ||
| Os06g0726200 | −1.71 | Endochitinase precursor |
| Os10g0160100 | −2.02 | Glycosyl hydrolases family 17 |
| Os07g0420700 | −1.80 | Glycosyl hydrolase, family 31 |
| Os01g0130400 | −1.01 | Glycosyl hydrolase, family 31 |
| Os11g0673200 | −1.39 | Glycosyl hydrolase family 3 protein |
| Os05g0399400 | −3.71 | CHIT5 - Chitinase family protein |
| Os01g0860500 | −1.11 | Glycosyl hydrolase |
| Os04g0604300 | −1.60 | Xyloglucan endotransglucosylase |
| Os04g0631200 | −1.60 | Xyloglucan endotransglycosylase |
| Os06g0697000 | −2.74 | Xyloglucan endotransglycosylase |
| Os11g0539200 | −2.11 | Xyloglucan endotransglycosylase XET2 |
| Os08g0237000 | −1.12 | XTH8_ORYSA Xyloglucan endotransglycosylase |
| Os06g0696400 | −1.87 | Xyloglycan endo-transglycosylase |
| Os03g0329500 | −1.07 | Endo-1,4-beta-glucanase |
| pectinesterase | ||
| Os09g0571100 | −1.06 | Pectinesterase |
| Os01g0312500 | −2.75 | Pectinesterase |
| Os07g0675100 | −1.27 | Pectinesterase |
| Os08g0450100 | −1.52 | Pectinesterase |
Note: RAP ID from Rice Annotation Project Database (RAP-DB): http://rapdb.dna.affrc.go.jp/. Data are presented as Log2 transform of the average of fold change from three replicates.