Table 2.
Predicted R genes and the targeting miRNAs
| Target | Counts (RPKM) | Annotation | Predicted regulator miRNA | |
|---|---|---|---|---|
| CK | P | |||
| Onc 235 | 7.9 | 15.4 | uncharacterized protein LOC100279616 | miR2088, miR5654 |
| Onc 649 | 12,.0 | 14.0 | OsJNBa0083D01.14 | miR1514 |
| Onc 650 | 7.8 | 3.0 | hypothetical protein OsI_07084 | miR1510a*, miR1514 |
| Onc 651 | 0 | 14.7 | putative disease resistance protein I2 | miR1514 |
| Onc 1207 | 59.9 | 93.6 | hypothetical protein OsI_15587 | miR1510a* |
| Onc 1471 | 60.9 | 81.6 | putative disease resistance protein RGA4 | miR1514, miR5654 |
| Onc 1537 | 86.2 | 85.7 | hypothetical protein OsJ_14506 | miR1514, miR2088, miR5654 |
| Onc 1613 | 13.2 | 27.5 | disease resistance protein I2 | miR1510, miR529g |
| Onc 1615 | 28.1 | 15.7 | NBS-containing resistance-like protein | miR5246 |
| Onc 1618 | 0.0 | 10.7 | hypothetical protein OsI_07084 | miR1510a* |
| Onc 1724 | 89.8 | 99.4 | hypothetical protein SORBIDRAFT_08g020630 | miR1514 |
| Onc 2107 | 8.5 | 15.0 | putative disease resistance protein | miR156k, miR2088, miR5654 |
| Onc 2524 | 18.5 | 27.2 | putative disease resistance protein RGA2 | miR2088 |
| Onc 2555 | 24.6 | 60.0 | putative disease resistance protein RGA4 | miR1514 |
| Onc 3695 | 11.7 | 22.9 | CC-NBS-LRR R protein | miR1510a*, miR529g |
| Onc 4069 | 36.1 | 32.0 | hypothetical protein OsI_15587 | miR1510a*, miR1514, miR2088, miR5246, miR5654 |
| Onc 4126 | 0.0 | 17.4 | CC-NBS-LRR R protein | miR1510a* |
| Onc 4434 | 16.5 | 10.8 | hypothetical protein VITISV_025836 | miR2088, miR5654 |
| Onc 4722 | 8.6 | 20.2 | hypothetical protein OsI_07084 | miR1510a*, miR894 |
| Onc 4724 | 41.8 | 107.4 | NB-ARC domain-containing protein | miR1510a*, miR857 |
| Onc 5026 | 0.0 | 15.7 | disease resistance protein I2 | miR166c |
| Onc 5046 | 26.3 | 70.0 | uncharacterized protein LOC100279616 | miR5654 |
| Onc 5277 | 25.9 | 52.6 | hypothetical protein OsI_07084 | miR1510, miR5246 |
| Onc 5425 | 41.1 | 48.2 | putative disease resistance protein | miR1514, miR5654 |
| Onc 5583 | 119.0 | 203.5 | hypothetical protein VITISV_018147 | miR482 |
| Onc 6091 | 5.2 | 17.7 | putative disease resistance protein | miR156k, miR2088, miR5654 |
| Onc 6121 | 3.2 | 7.5 | hypothetical protein OsI_15587 | miR1514, miR5246 |
| Onc 7005 | 58.9 | 62.4 | putative disease resistance RPP13 protein | miR1514 |
| Onc 7221 | 20.1 | 50.3 | hypothetical protein OsI_07084 | miR1510a* |
| Onc 7977 | 32.2 | 25.1 | putative disease resistance protein | miR1510a*, miR5246 |
| Onc 8764 | 0.0 | 19.9 | OsJNBa0083D01.14 | miR5654 |
| Onc 8916 | 23.4 | 40.2 | hypothetical protein OsI_07084 | miR156k, miR5246 |
| Onc 9873 | 0.0 | 15.9 | NB-ARC domain containing protein | miR1510a*, miR5246 |
| Onc 11,319 | 9.1 | 10.6 | putative disease resistance protein RGA3-like | miR1514, miR5246 |
| Onc 12,822 | 31.6 | 53.9 | hypothetical protein OsI_15587 | miR1510a*, miR156k |
| Onc 13,214 | 0.0 | 11.9 | NBS-LRR protein | miR1514, miR529g |
| Onc 15,037 | 0.0 | 9.0 | NB-ARC domain containing protein | miR1510a* |
| Onc 15,081 | 26.7 | 20.8 | putative disease resistance RPP13 protein | miR5246 |
| Onc 16,931 | 7.8 | 21.2 | hypothetical protein OsI_15587 | miR1510a*, miR1514, miR166c, miR2088, miR5246, miR529g |
| Onc 19,773 | 6.3 | 0.0 | putative disease resistance protein At3g14460 | miR2088, miR5654 |
| Onc 19,900 | 0.0 | 3.4 | OSIGBa0148A10.13 | miR5654 |
| Onc 20,607 | 0.0 | 6.5 | hypothetical protein OsJ_14506 | miR838 |
| Onc 28,117 | 9.1 | 3.6 | NBS-LRR R protein | miR2118 |
Count normalized by RPKM (reads per kilobase million). CK, control RNA from uncolonized Oncidium roots; P, RNA from Pi-colonized Oncidium roots