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. 2019 Dec 30;10:53. doi: 10.1186/s13100-019-0197-9

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 8 — Performance comparison between McClintock pipeline and our proposed tool combinations for MITEs (a) and LTR-retrotransposons (b). PoPoolationTE2 and Teflon are filtered by zygosity as explained in the text (cutoffs of 0.7 and 1, respectively)