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. Author manuscript; available in PMC: 2020 Nov 15.
Published in final edited form as: Arch Biochem Biophys. 2019 Oct 14;676:108140. doi: 10.1016/j.abb.2019.108140

Table 1.

Kinetic Rate Constant Estimates determined by Progress Curve Analysis a

Inhibitor k1 (M−1s−1) SD k3 (s−1) SD k4 (M−1s−1) SD k5 (s−1) SD Ki (nM) SD
EapH1 WTb 6.0×105 2.2×105 7.4 0.8 2.0×106 1.4×105 4.3×10−5 1.3×10−5 0.021 0.005
EapH2 WT 3.1×105 4.5×104 7.8 0.2 2.9×105 4.3×104 5.9×10−4 2.1×10−5 2.11 0.32
H1 R89Mb,c - - 7.0 0.1 - - 321 12
H2 R90M 2.4×105 1.3×105 7.2 1.7 2.8×105 1.3×105 5.5×10−4 4.1×10−5 2.3 1
H1 L59Fc - - 6.3 0.3 - - 200 5
H2 K120M 3.2×105 5.5×104 8.3 1.1 2.6×105 1.1×105 8.3×10−4 1.8×10−5 3.8 2.0
H2 K121M 4.3×105 2.3×105 7.0 0.7 3.3×105 6.6×104 9.1×10−4 6.9×10−5 2.9 0.7
H2 D122N 3.5×105 4.6×104 7.9 1.5 2.6×105 5.8×104 3.7×10−4 1.6×10−5 1.5 0.4
H2 D122A 6.9×105 5.0×105 8.3 2.3 1.2×105 1.5×104 3.1×10−3 1.2×10−4 26 3
H2 S123A 1.9×105 5.4×104 6.6 0.5 1.6×105 7.8×104 4.1×10−4 2.6×10−5 3.2 2.1
H2 Y124F 5.5×105 1.3×105 8.4 0.2 1.2×105 3.8×104 2.2×10−3 5.1×10−5 18.6 4.9
H2 T125Ac - - 6.2 0.2 - - 53 4
H1 N126A 2.4×105 6.4×104 6.3 0.5 9.5×105 5.0×105 1.0×10−4 2.5×10−5 0.166 0.163
H2 N127Ac - - 5.8 0.5 - - 397 66
(-)b,d 4.0×105 2.2×105 7.4 0.8 - - -
a

Microscopic rate constant estimates are the average of at least three individual sets of 57 progress curves (three [elastase], three [substrate] per [elastase], and five [inhibitor] per [substrate].

b

values previously determined by Herdendorf and Geisbrecht.3

c

Due to the loss of the time-dependent inhibition characteristic, these mutants were analyzed by a classical 5×5 inhibition assay. The data (n = 3) were globally fit to a competitive inhibition model using SigmaPlot 10.0/Enzyme Kinetics Module 1.3 (Systat Software, Inc). The Ki estimates reported are an average of three individual data sets. Errors reported are the standard deviation. k4 and k5 were estimated by following the EapH2 mutants binding to immobilized elastase using surface plasmon resonance (See Table 2).

d

Microscopic rate constant estimates are the average of 10 individual sets of 12 progress curves (two [elastase], six [substrate] per [elastase].