Table 4.

CRAPome analysis of Dickinson et al. reported G- and t-test datasets, SAINT analyzed Dickinson et al. and Olson et al. SAINT datasets

Dickinson et al. datasets	Statistical analysis tool used	Statistically significant proteins queried	Identified contaminant proteins	Commonly identified proteins	Proteins identified as contaminants (%)
8 hpi	G- and t-test	90	15		16.67
8 hpi	SAINT#	0	n/a	n/a	n/a
16 hpi	G- and t-test	180	19		10.56
16 hpi	SAINT#	17	3	(2)*	17.65
24 hpi	G- and t-test	399	33		8.27
24 hpi	SAINT#	76	11	(11)*	14.47
Olson et al. datasets	Statistical analysis tool	Total proteins input	Identified contaminant proteins	Commonly identified proteins	Proteins identified as contaminants (%)
24 hpi 1-peptide	SAINT	199	13		6.53
24 hpi 2-peptide	SAINT	101	7	(7)&	6.93

^#SAINT statistical significance calculated using 1-peptide minimum threshold in Scaffold

^*denotes the commonly identified proteins using G- and t-test and SAINT

^&denotes commonly identified proteins using SAINT 1-peptide and 2-peptide