. Author manuscript; available in PMC: 2021 Feb 10.

Published in final edited form as: J Proteomics. 2019 Nov 21;212:103595. doi: 10.1016/j.jprot.2019.103595

Table 6.

Comparison of minimum peptide threshold on SAINT calculated statistically significant C. trachomatis L2 proteins

Sample	Protein (Uniprot ID)	Protein^a	1 peptide minimum BFDR ^b	2 peptide minimum BFDR ^b
IncF-APEX2	A0A0H3MKT3_CHLT2	CT223	0	0
	INCD_CHLT2	IncD	0.02	0.01
	INCF_CHLT2	IncF	0.03	0.02
IncA_TM-APEX2	A0A0H3MD02_CHLT2	IncA	0	0
	A0A0H3MKT3_CHLT2	CT223	0.02	0
IncA-APEX2	OMCB_CHLT2	OmcB	0	0
	A0A0H3MKT3_CHLT2	CT223	0	0
	A0A0H3MD02_CHLT2	IncA	0	0
	MOMP_CHLT2	MOMP	ns	0.05

Protein name indicated using C. trachomatis serovar D naming convention

Bayesian False Discovery Rate (SAINT) ns; not significant