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. Author manuscript; available in PMC: 2021 Feb 10.
Published in final edited form as: J Proteomics. 2019 Nov 21;212:103595. doi: 10.1016/j.jprot.2019.103595

Table 6.

Comparison of minimum peptide threshold on SAINT calculated statistically significant C. trachomatis L2 proteins

Sample Protein (Uniprot ID) Proteina 1 peptide minimum
BFDR b
2 peptide minimum
BFDR b
IncF-APEX2 A0A0H3MKT3_CHLT2 CT223 0 0
INCD_CHLT2 IncD 0.02 0.01
INCF_CHLT2 IncF 0.03 0.02
IncATM-APEX2 A0A0H3MD02_CHLT2 IncA 0 0
A0A0H3MKT3_CHLT2 CT223 0.02 0
IncA-APEX2 OMCB_CHLT2 OmcB 0 0
A0A0H3MKT3_CHLT2 CT223 0 0
A0A0H3MD02_CHLT2 IncA 0 0
MOMP_CHLT2 MOMP ns 0.05
a

Protein name indicated using C. trachomatis serovar D naming convention

b

Bayesian False Discovery Rate (SAINT) ns; not significant