Table 1.
Marker | Exon number | Target codons | Size of PCR product (bp) | LOD (%) | DCE separation temperature (°C) |
KRAS | 2 | 12, 13 | 112 | 0.03 | 50 |
3 | 59, 61 | 100 | 0.05 | 51 | |
4 | 117, 146 | 150 | 0.05 | 45 | |
TP53 | 5 | 170-187 | 107 | 0.1 | 58 |
6 | 187-224 | 169 | 0.5 | 52 | |
7 | 225-261 | 160 | 0.5 | 52 | |
8 | 262-307 | 151 | 0.03 | 56 | |
APC | 15 | 854-896 | 128 | 0.7 | 48 |
15 | 1275-1308 | 100 | 0.7 | 48 | |
15 | 1290-1335 | 136 | 0.6 | 52 | |
15 | 1389-1446 | 174 | 0.3 | 48 | |
15 | 1430-1463 | 101 | 1 | 48 | |
15 | 1479-1530 | 156 | 1 | 51 | |
15 | 1539-1585 | 141 | 0.8 | 52 | |
PIK3CA | 9 | 542 | 106 | 0.2 | 48 |
20 | 1025, 1031, 1047 | 136 | 0.3 | 49 | |
BRAF | 15 | 600 | 230 | 0.05 | 48 |
CTNNB1 | 3 | 45 | 152 | 0.4 | 52 |
bp: Base pair; DCE: Denaturing capillary electrophoresis; LOD: Limit of detection.