Specifications Table

Subject area	Biology
More specific subject area	Biochemistry, omics analysis, protein detection
Type of data	Spectra, figures
How data was acquired	Liquid chromatography-tandem mass spectrometric analysis was carried out using Q Exactive high-resolution mass spectrometer (Thermo Fisher Scientific, USA) coupled with an Ultimate 3000 Nano-flow HPLC system (Thermo Fisher Scientific, USA)
Data format	Raw, filtered, analyzed
Experimental factors	PMJ2R cells were infected with TBEV (strain Hypr) for 2 and 6 days
Experimental features	-Cultivation and infection of cells. -Cell lysis followed by protein precipitation. -Digestion of proteins. -LC-MS/MS analysis. -Data processing.
Data source location	Moscow, Russia
Data accessibility	Repository name: Proteomic data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository (http://www.proteomexchange.org/) Data identification number: PXD015164, PXD016227 Direct URL to data: https://www.ebi.ac.uk/pride/archive/
Related research article	Morphofunctional characteristics of the immune system in CBA and C57BL/6G mice. Shkurupiy V.A., Tkachev V.O., Potapova O.V., Luzgina N.G., Bugrimova J.S., Obedinskaya K.S., Zaiceva N.S., Chechushkov A.V. Bulletin of Experimental Biology and Medicine. 2011.150(6); 725–728.